Analysis of interatomic Contacts of Structural Units in PDB entry:
7LKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LKQ entry

There are 2 chains in PDB entry 7LKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 436GLY 689
B
 GLY 9GLY 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7LKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 455Right-handed alpha
Helix 2
AA2
A
490 500Right-handed alpha
Helix 3
AA3
A
503 525Right-handed alpha
Helix 4
AA4
A
537 541Right-handed 310
Helix 5
AA5
A
542 557Right-handed alpha
Helix 6
AA6
A
559 561Right-handed 310
Helix 7
AA7
A
569 575Right-handed alpha
Helix 8
AA8
A
575 588Right-handed alpha
Helix 9
AA9
A
603 611Right-handed alpha
Helix 10
AB1
A
619 624Right-handed alpha
Helix 11
AB2
A
625 629Right-handed 310
Helix 12
AB3
A
630 644Right-handed alpha
Helix 13
AB4
A
657 667Right-handed alpha
Helix 14
AB5
B
17 24Right-handed alpha
Helix 15
AB6
B
90 105Right-handed alpha
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There are 2 sheets in PDB entry 7LKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
47 53parallel
Strand 3
B
60 70anti-parallel
Strand 4
A
487 489anti-parallel
Strand 5
A
475 484anti-parallel
Strand 6
B
82 86first strand
Strand 7
B
33 37anti-parallel
Strand 8
B
25 26anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
47 53parallel
Strand 3
B
60 70anti-parallel
Strand 4
A
530 534first strand
Strand 5
A
563 568parallel
Strand 6
A
592 598parallel
Strand 7
A
615 618parallel
Strand 8
A
649 652parallel
Strand 9
A
671 672parallel
Strand 10
A
458 467anti-parallel
Strand 11
A
475 484anti-parallel
Strand 12
B
82 86first strand
Strand 13
B
33 37anti-parallel
Strand 14
B
25 26anti-parallel
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