Analysis of interatomic Contacts of Structural Units in PDB entry:
7LL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LL3 entry

There are 2 chains in PDB entry 7LL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 382
B
 PHE 5LYS 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 7LL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 32Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
80 83Right-handed 310
Helix 4
AA4
A
110 114Right-handed 310
Helix 5
AA5
A
135 154Right-handed alpha
Helix 6
AA6
A
194 206Right-handed alpha
Helix 7
AA7
A
212 216Right-handed 310
Helix 8
AA8
A
269 288Right-handed alpha
Helix 9
AA9
A
321 333Right-handed alpha
Helix 10
AB1
A
336 345Right-handed alpha
Helix 11
AB2
A
351 356Right-handed 310
Helix 12
AB3
A
365 369Right-handed 310
Helix 13
AB4
A
372 379Right-handed alpha
Helix 14
AB5
B
14 34Right-handed alpha
Helix 15
AB6
B
63 76Right-handed alpha
Helix 16
AB7
B
80 83Right-handed 310
Helix 17
AB8
B
110 114Right-handed 310
Helix 18
AB9
B
135 147Right-handed alpha
Helix 19
AC1
B
148 152Right-handed 310
Helix 20
AC2
B
194 205Right-handed alpha
Helix 21
AC3
B
245 250Right-handed alpha
Helix 22
AC4
B
269 288Right-handed alpha
Helix 23
AC5
B
321 333Right-handed alpha
Helix 24
AC6
B
336 345Right-handed alpha
Helix 25
AC7
B
365 369Right-handed 310
Helix 26
AC8
B
372 381Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7LL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
160 173anti-parallel
Strand 3
A
176 189anti-parallel
Strand 4
A
221 224parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
49 57parallel
Strand 3
A
38 46anti-parallel
Strand 4
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 127first strand
Strand 2
A
293 300anti-parallel
Strand 3
A
309 313anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
164 172anti-parallel
Strand 3
B
177 187anti-parallel
Strand 4
B
216 224parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 96first strand
Strand 2
B
49 57parallel
Strand 3
B
38 46anti-parallel
Strand 4
B
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 127first strand
Strand 2
B
293 300anti-parallel
Strand 3
B
309 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il