Analysis of interatomic Contacts of Structural Units in PDB entry:
7LLL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LLL entry

There are 6 chains in PDB entry 7LLL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLN 1	ASN 340
G	ASN 5	ARG 62
N	GLN 1	SER 128
P	HIS 1	ASN 28
R	THR 29	ARG 421

There are 39 helices in PDB entry 7LLL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	23	33	Right-handed alpha
Helix 3	AA3	A	266	278	Right-handed alpha
Helix 4	AA4	A	293	302	Right-handed alpha
Helix 5	AA5	A	312	316	Right-handed 310
Helix 6	AA6	A	331	350	Right-handed alpha
Helix 7	AA7	A	370	375	Right-handed alpha
Helix 8	AA8	A	375	380	Right-handed alpha
Helix 9	AA9	A	380	391	Right-handed alpha
Helix 10	AB1	B	2	23	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	7	21	Right-handed alpha
Helix 13	AB4	G	29	33	Right-handed 310
Helix 14	AB5	G	34	44	Right-handed alpha
Helix 15	AB6	G	45	48	Right-handed 310
Helix 16	AB7	G	55	59	Right-handed 310
Helix 17	AB8	N	28	32	Right-handed 310
Helix 18	AB9	P	2	28	Right-handed alpha
Helix 19	AC1	R	31	53	Right-handed alpha
Helix 20	AC2	R	89	93	Right-handed 310
Helix 21	AC3	R	139	149	Right-handed alpha
Helix 22	AC4	R	150	169	Right-handed alpha
Helix 23	AC5	R	174	204	Right-handed alpha
Helix 24	AC6	R	223	228	Right-handed alpha
Helix 25	AC7	R	228	237	Right-handed alpha
Helix 26	AC8	R	244	251	Right-handed alpha
Helix 27	AC9	R	264	268	Right-handed 310
Helix 28	AD1	R	269	274	Right-handed alpha
Helix 29	AD2	R	276	280	Right-handed 310
Helix 30	AD3	R	281	291	Right-handed alpha
Helix 31	AD4	R	294	298	Right-handed 310
Helix 32	AD5	R	304	308	Right-handed 310
Helix 33	AD6	R	310	329	Right-handed alpha
Helix 34	AD7	R	330	338	Right-handed alpha
Helix 35	AD8	R	345	361	Right-handed alpha
Helix 36	AD9	R	362	367	Right-handed alpha
Helix 37	AE1	R	378	391	Right-handed alpha
Helix 38	AE2	R	393	404	Right-handed alpha
Helix 39	AE3	R	406	419	Right-handed alpha

There are 13 sheets in PDB entry 7LLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	304	307	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	337	339	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	125	126	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	51	first strand
Strand 2	N	34	39	anti-parallel
Strand 3	N	93	95	anti-parallel
Strand 4	N	122	123	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	73	first strand
Strand 2	N	78	81	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	81	first strand
Strand 2	R	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LLL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LLL