Analysis of interatomic Contacts of Structural Units in PDB entry:
7LLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LLY entry

There are 6 chains in PDB entry 7LLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	SER 2	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 128
P	HIS 1	LEU 26
R	THR 35	ARG 421

There are 27 helices in PDB entry 7LLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	39	Right-handed alpha
Helix 2	AA2	A	233	239	Right-handed 310
Helix 3	AA3	A	266	278	Right-handed alpha
Helix 4	AA4	A	312	316	Right-handed 310
Helix 5	AA5	A	331	350	Right-handed alpha
Helix 6	AA6	A	367	391	Right-handed alpha
Helix 7	AA7	B	3	25	Right-handed alpha
Helix 8	AA8	G	7	24	Right-handed alpha
Helix 9	AA9	G	29	44	Right-handed alpha
Helix 10	AB1	G	45	48	Right-handed 310
Helix 11	AB2	N	62	65	Right-handed 310
Helix 12	AB3	N	87	91	Right-handed 310
Helix 13	AB4	P	2	26	Right-handed alpha
Helix 14	AB5	R	36	53	Right-handed alpha
Helix 15	AB6	R	89	94	Right-handed alpha
Helix 16	AB7	R	139	168	Right-handed alpha
Helix 17	AB8	R	169	173	Right-handed 310
Helix 18	AB9	R	174	206	Right-handed alpha
Helix 19	AC1	R	223	256	Right-handed alpha
Helix 20	AC2	R	261	275	Right-handed alpha
Helix 21	AC3	R	275	292	Right-handed alpha
Helix 22	AC4	R	302	337	Right-handed alpha
Helix 23	AC5	R	346	361	Right-handed alpha
Helix 24	AC6	R	362	368	Right-handed 310
Helix 25	AC7	R	377	387	Right-handed alpha
Helix 26	AC8	R	389	404	Right-handed alpha
Helix 27	AC9	R	406	421	Right-handed alpha

There are 11 sheets in PDB entry 7LLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	247	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	123	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	50	anti-parallel
Strand 6	N	59	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	81	first strand
Strand 2	R	102	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LLY