Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LMB entry

There are 8 chains in PDB entry 7LMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	C 4	U 159
C	T 8	T 21
H	GLU 115	LYS 532
A	LYS 11	LYS 1110
D	GLN 511	ASN 697
E	GLN 29	GLU 175
F	GLN 5	GLN 121
G	MET 1	ILE 184

There are 69 helices in PDB entry 7LMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	115	131	Right-handed alpha
Helix 2	AA2	H	133	138	Right-handed alpha
Helix 3	AA3	H	141	147	Right-handed alpha
Helix 4	AA4	H	155	160	Right-handed alpha
Helix 5	AA5	H	162	167	Right-handed alpha
Helix 6	AA6	H	203	215	Right-handed alpha
Helix 7	AA7	H	391	401	Right-handed alpha
Helix 8	AA8	H	470	480	Right-handed alpha
Helix 9	AA9	H	503	531	Right-handed alpha
Helix 10	AB1	A	19	26	Right-handed alpha
Helix 11	AB2	A	35	44	Right-handed alpha
Helix 12	AB3	A	53	63	Right-handed alpha
Helix 13	AB4	A	88	100	Right-handed alpha
Helix 14	AB5	A	127	132	Right-handed alpha
Helix 15	AB6	A	134	144	Right-handed alpha
Helix 16	AB7	A	144	155	Right-handed alpha
Helix 17	AB8	A	173	177	Right-handed 310
Helix 18	AB9	A	225	229	Right-handed 310
Helix 19	AC1	A	245	249	Right-handed 310
Helix 20	AC2	A	282	289	Right-handed alpha
Helix 21	AC3	A	300	319	Right-handed alpha
Helix 22	AC4	A	322	331	Right-handed alpha
Helix 23	AC5	A	336	350	Right-handed alpha
Helix 24	AC6	A	356	368	Right-handed alpha
Helix 25	AC7	A	372	386	Right-handed alpha
Helix 26	AC8	A	394	410	Right-handed alpha
Helix 27	AC9	A	418	424	Right-handed alpha
Helix 28	AD1	A	444	467	Right-handed alpha
Helix 29	AD2	A	467	475	Right-handed alpha
Helix 30	AD3	A	493	508	Right-handed alpha
Helix 31	AD4	A	521	528	Right-handed alpha
Helix 32	AD5	A	560	577	Right-handed alpha
Helix 33	AD6	A	589	608	Right-handed alpha
Helix 34	AD7	A	621	625	Right-handed 310
Helix 35	AD8	A	627	637	Right-handed alpha
Helix 36	AD9	A	691	694	Right-handed 310
Helix 37	AE1	A	742	755	Right-handed alpha
Helix 38	AE2	A	777	794	Right-handed alpha
Helix 39	AE3	A	794	804	Right-handed alpha
Helix 40	AE4	A	823	842	Right-handed alpha
Helix 41	AE5	A	845	849	Right-handed 310
Helix 42	AE6	A	895	901	Right-handed alpha
Helix 43	AE7	A	911	926	Right-handed alpha
Helix 44	AE8	A	938	965	Right-handed alpha
Helix 45	AE9	A	972	980	Right-handed alpha
Helix 46	AF1	A	983	1009	Right-handed alpha
Helix 47	AF2	A	1014	1038	Right-handed alpha
Helix 48	AF3	A	1046	1075	Right-handed alpha
Helix 49	AF4	A	1081	1094	Right-handed alpha
Helix 50	AF5	A	1099	1103	Right-handed 310
Helix 51	AF6	A	1104	1109	Right-handed alpha
Helix 52	AF7	D	516	526	Right-handed alpha
Helix 53	AF8	D	603	615	Right-handed alpha
Helix 54	AF9	D	622	634	Right-handed alpha
Helix 55	AG1	D	636	645	Right-handed alpha
Helix 56	AG2	D	679	696	Right-handed alpha
Helix 57	AG3	E	35	49	Right-handed alpha
Helix 58	AG4	E	110	123	Right-handed alpha
Helix 59	AG5	E	153	175	Right-handed alpha
Helix 60	AG6	F	15	22	Right-handed alpha
Helix 61	AG7	F	99	111	Right-handed alpha
Helix 62	AG8	F	114	119	Right-handed alpha
Helix 63	AG9	G	2	7	Right-handed alpha
Helix 64	AH1	G	9	29	Right-handed alpha
Helix 65	AH2	G	33	41	Right-handed alpha
Helix 66	AH3	G	87	94	Right-handed alpha
Helix 67	AH4	G	150	156	Right-handed alpha
Helix 68	AH5	G	158	161	Right-handed 310
Helix 69	AH6	G	162	184	Right-handed alpha

There are 19 sheets in PDB entry 7LMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	154	first strand
Strand 2	H	228	229	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	411	first strand
Strand 2	H	461	465	anti-parallel
Strand 3	H	380	384	anti-parallel
Strand 4	H	494	498	anti-parallel
Strand 5	H	488	491	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	166	170	anti-parallel
Strand 5	A	730	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	696	706	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	166	170	anti-parallel
Strand 5	A	730	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	738	741	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	118	121	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	489	492	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	763	766	anti-parallel
Strand 3	A	757	760	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	535	first strand
Strand 2	A	544	547	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	615	first strand
Strand 2	A	817	821	anti-parallel
Strand 3	A	808	812	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	537	first strand
Strand 2	D	652	658	anti-parallel
Strand 3	D	669	676	anti-parallel
Strand 4	D	597	602	parallel
Strand 5	D	587	592	anti-parallel
Strand 6	D	540	542	anti-parallel
Strand 7	D	649	650	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	582	584	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	661	662	first strand
Strand 2	D	665	666	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	66	75	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	94	96	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	66	75	parallel
Strand 3	E	129	135	anti-parallel
Strand 4	E	142	149	anti-parallel
Strand 5	E	98	100	parallel
Strand 6	E	85	91	anti-parallel
Strand 7	E	94	96	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	63	64	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	42	45	anti-parallel
Strand 3	F	24	32	anti-parallel
Strand 4	F	70	77	anti-parallel
Strand 5	F	87	89	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	110	117	anti-parallel
Strand 3	G	120	127	anti-parallel
Strand 4	G	79	85	parallel
Strand 5	G	71	76	anti-parallel
Strand 6	G	65	66	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	110	117	anti-parallel
Strand 3	G	120	127	anti-parallel
Strand 4	G	79	85	parallel
Strand 5	G	144	147	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	103	106	anti-parallel
Strand 3	G	131	134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMB