Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LMC entry

There are 6 chains in PDB entry 7LMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR -5	GLN 0
A	SER 1	GLN 306
B	SER 1	GLN 306
F	THR -5	GLN 0
C	SER 1	GLN 306
D	SER 1	PHE 305

There are 41 helices in PDB entry 7LMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	15	Right-handed alpha
Helix 2	AA2	A	41	44	Right-handed 310
Helix 3	AA3	A	45	50	Right-handed alpha
Helix 4	AA4	A	53	60	Right-handed alpha
Helix 5	AA5	A	62	64	Right-handed 310
Helix 6	AA6	A	200	213	Right-handed alpha
Helix 7	AA7	A	226	237	Right-handed alpha
Helix 8	AA8	A	243	257	Right-handed alpha
Helix 9	AA9	A	260	275	Right-handed alpha
Helix 10	AB1	A	292	298	Right-handed alpha
Helix 11	AB2	B	10	15	Right-handed alpha
Helix 12	AB3	B	41	43	Right-handed 310
Helix 13	AB4	B	53	61	Right-handed alpha
Helix 14	AB5	B	62	66	Right-handed 310
Helix 15	AB6	B	200	214	Right-handed alpha
Helix 16	AB7	B	226	237	Right-handed alpha
Helix 17	AB8	B	243	250	Right-handed alpha
Helix 18	AB9	B	250	258	Right-handed alpha
Helix 19	AC1	B	260	275	Right-handed alpha
Helix 20	AC2	B	292	300	Right-handed alpha
Helix 21	AC3	C	10	15	Right-handed alpha
Helix 22	AC4	C	41	43	Right-handed 310
Helix 23	AC5	C	46	50	Right-handed 310
Helix 24	AC6	C	53	60	Right-handed alpha
Helix 25	AC7	C	200	214	Right-handed alpha
Helix 26	AC8	C	226	237	Right-handed alpha
Helix 27	AC9	C	243	250	Right-handed alpha
Helix 28	AD1	C	250	258	Right-handed alpha
Helix 29	AD2	C	260	273	Right-handed alpha
Helix 30	AD3	C	292	298	Right-handed alpha
Helix 31	AD4	D	10	15	Right-handed alpha
Helix 32	AD5	D	41	44	Right-handed 310
Helix 33	AD6	D	47	51	Right-handed 310
Helix 34	AD7	D	53	60	Right-handed alpha
Helix 35	AD8	D	62	66	Right-handed 310
Helix 36	AD9	D	200	214	Right-handed alpha
Helix 37	AE1	D	226	238	Right-handed alpha
Helix 38	AE2	D	243	250	Right-handed alpha
Helix 39	AE3	D	250	258	Right-handed alpha
Helix 40	AE4	D	260	275	Right-handed alpha
Helix 41	AE5	D	292	301	Right-handed alpha

There are 13 sheets in PDB entry 7LMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	-2	-1	first strand
Strand 2	B	156	166	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	111	118	anti-parallel
Strand 5	B	121	129	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	156	166	parallel
Strand 3	B	172	175	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	25	32	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	86	91	anti-parallel
Strand 6	A	77	83	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	156	166	parallel
Strand 3	A	148	153	anti-parallel
Strand 4	A	111	118	anti-parallel
Strand 5	A	121	129	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	156	166	parallel
Strand 3	A	172	175	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	17	22	anti-parallel
Strand 4	B	25	32	anti-parallel
Strand 5	B	35	39	anti-parallel
Strand 6	B	86	90	anti-parallel
Strand 7	B	82	83	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-2	-1	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	148	150	anti-parallel
Strand 4	D	111	118	anti-parallel
Strand 5	D	121	129	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-2	-1	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	172	175	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	26	32	anti-parallel
Strand 3	C	35	39	anti-parallel
Strand 4	C	86	91	anti-parallel
Strand 5	C	77	83	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	111	117	anti-parallel
Strand 3	C	148	150	anti-parallel
Strand 4	C	161	166	anti-parallel
Strand 5	C	172	176	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	156	157	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	67	70	anti-parallel
Strand 3	D	17	21	anti-parallel
Strand 4	D	26	32	anti-parallel
Strand 5	D	35	39	anti-parallel
Strand 6	D	86	91	anti-parallel
Strand 7	D	77	83	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	157	159	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMC