Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LMM entry

There are 12 chains in PDB entry 7LMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 724	ALA 897
B	LYS 725	ALA 897
C	LYS 725	ALA 897
D	LYS 725	ALA 897
F	HIS 18	ARG 19
F	VAL 21	ASN 25
G	LYS 16	ARG 19
G	VAL 21	ASN 25
I	ARG 17	ARG 19
I	VAL 21	ASN 25
H	ARG 17	ARG 19
H	VAL 21	ASN 25

There are 13 helices in PDB entry 7LMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	796	800	Right-handed 310
Helix 2	AA2	A	823	825	Right-handed 310
Helix 3	AA3	A	885	889	Right-handed 310
Helix 4	AA4	A	890	896	Right-handed alpha
Helix 5	AA5	B	796	800	Right-handed 310
Helix 6	AA6	B	885	889	Right-handed 310
Helix 7	AA7	B	890	897	Right-handed alpha
Helix 8	AA8	C	796	800	Right-handed 310
Helix 9	AA9	C	885	889	Right-handed 310
Helix 10	AB1	C	890	897	Right-handed alpha
Helix 11	AB2	D	796	800	Right-handed 310
Helix 12	AB3	D	885	889	Right-handed 310
Helix 13	AB4	D	890	897	Right-handed alpha

There are 16 sheets in PDB entry 7LMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	731	first strand
Strand 2	A	746	749	anti-parallel
Strand 3	A	752	755	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	741	744	anti-parallel
Strand 3	A	772	782	anti-parallel
Strand 4	A	786	795	anti-parallel
Strand 5	A	812	821	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	741	744	anti-parallel
Strand 3	A	772	782	anti-parallel
Strand 4	A	759	762	anti-parallel
Strand 5	A	827	829	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	867	first strand
Strand 2	A	872	874	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	731	first strand
Strand 2	B	746	749	anti-parallel
Strand 3	B	752	755	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	738	first strand
Strand 2	B	741	744	anti-parallel
Strand 3	B	772	782	anti-parallel
Strand 4	B	786	795	anti-parallel
Strand 5	B	812	821	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	738	first strand
Strand 2	B	741	744	anti-parallel
Strand 3	B	772	782	anti-parallel
Strand 4	B	759	762	anti-parallel
Strand 5	B	825	829	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	865	867	first strand
Strand 2	B	872	874	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	728	731	first strand
Strand 2	C	746	749	anti-parallel
Strand 3	C	752	755	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	736	738	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	772	781	anti-parallel
Strand 4	C	787	795	anti-parallel
Strand 5	C	812	821	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	736	738	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	772	781	anti-parallel
Strand 4	C	759	762	anti-parallel
Strand 5	C	825	829	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	865	867	first strand
Strand 2	C	872	874	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	728	731	first strand
Strand 2	D	746	749	anti-parallel
Strand 3	D	752	755	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	736	737	first strand
Strand 2	D	741	744	anti-parallel
Strand 3	D	772	782	anti-parallel
Strand 4	D	786	795	anti-parallel
Strand 5	D	812	821	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	736	737	first strand
Strand 2	D	741	744	anti-parallel
Strand 3	D	772	782	anti-parallel
Strand 4	D	759	762	anti-parallel
Strand 5	D	825	829	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	865	867	first strand
Strand 2	D	872	874	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMM