Analysis of interatomic Contacts of Structural Units in PDB entry:
7LMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LMS entry

There are 2 chains in PDB entry 7LMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
SER 4GLU 141
A
PRO 22GLU 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7LMS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
18 20Right-handed 310
Helix 2
AA2
B
21 27Right-handed alpha
Helix 3
AA3
B
33 35Right-handed 310
Helix 4
AA4
B
103 107Right-handed 310
Helix 5
AA5
B
137 141Right-handed 310
Helix 6
AA6
A
23 37Right-handed alpha
Helix 7
AA7
A
42 44Right-handed 310
Helix 8
AA8
A
45 63Right-handed alpha
Helix 9
AA9
A
74 77Right-handed 310
Helix 10
AB1
A
78 88Right-handed alpha
Helix 11
AB2
A
126 128Right-handed 310
Helix 12
AB3
A
131 135Right-handed alpha
Helix 13
AB4
A
139 144Right-handed alpha
Helix 14
AB5
A
146 152Right-handed alpha
Helix 15
AB6
A
152 166Right-handed alpha
Helix 16
AB7
A
172 177Right-handed alpha
Helix 17
AB8
A
185 189Right-handed 310
Helix 18
AB9
A
190 195Right-handed alpha
Helix 19
AC1
A
196 198Right-handed 310
Helix 20
AC2
A
201 227Right-handed alpha
Helix 21
AC3
A
228 231Right-handed 310
Helix 22
AC4
A
240 253Right-handed alpha
Helix 23
AC5
A
317 324Right-handed alpha
Helix 24
AC6
A
349 360Right-handed alpha
Helix 25
AC7
A
378 389Right-handed alpha
Helix 26
AC8
A
391 398Right-handed alpha
Helix 27
AC9
A
403 409Right-handed alpha
Helix 28
AD1
A
419 439Right-handed alpha
Helix 29
AD2
A
444 455Right-handed alpha
Helix 30
AD3
A
458 494Right-handed alpha
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There are 7 sheets in PDB entry 7LMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 9first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
37 41anti-parallel
Strand 4
B
28 32anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 72first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
110 113anti-parallel
Strand 4
B
116 123anti-parallel
Strand 5
B
128 133anti-parallel
Strand 6
B
90 99anti-parallel
Strand 7
B
74 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 101first strand
Strand 2
A
105 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 124first strand
Strand 2
A
294 298anti-parallel
Strand 3
A
286 289anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
129 130first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
256 259anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
278 279first strand
Strand 2
A
310 311parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
336 342first strand
Strand 2
A
365 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il