Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LNP entry

There are 4 chains in PDB entry 7LNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 30	GLU 594
C	ASP 30	GLU 594
D	GLY 37	ASN 593
E	GLY 37	LYS 597

There are 76 helices in PDB entry 7LNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	35	Right-handed alpha
Helix 2	AA2	A	44	50	Right-handed alpha
Helix 3	AA3	A	55	62	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	81	86	Right-handed alpha
Helix 6	AA6	A	91	101	Right-handed alpha
Helix 7	AA7	A	108	116	Right-handed 310
Helix 8	AA8	A	122	133	Right-handed alpha
Helix 9	AA9	A	168	181	Right-handed alpha
Helix 10	AB1	A	190	195	Right-handed 310
Helix 11	AB2	A	197	202	Right-handed 310
Helix 12	AB3	A	205	209	Right-handed 310
Helix 13	AB4	A	212	216	Right-handed 310
Helix 14	AB5	A	238	257	Right-handed alpha
Helix 15	AB6	A	265	271	Right-handed 310
Helix 16	AB7	A	272	291	Right-handed alpha
Helix 17	AB8	A	345	359	Right-handed alpha
Helix 18	AB9	A	376	394	Right-handed alpha
Helix 19	AC1	A	395	397	Right-handed 310
Helix 20	AC2	A	455	458	Right-handed 310
Helix 21	AC3	C	44	52	Right-handed alpha
Helix 22	AC4	C	55	62	Right-handed alpha
Helix 23	AC5	C	70	74	Right-handed 310
Helix 24	AC6	C	81	86	Right-handed alpha
Helix 25	AC7	C	91	101	Right-handed alpha
Helix 26	AC8	C	108	113	Right-handed 310
Helix 27	AC9	C	122	133	Right-handed alpha
Helix 28	AD1	C	168	181	Right-handed alpha
Helix 29	AD2	C	190	195	Right-handed 310
Helix 30	AD3	C	197	202	Right-handed 310
Helix 31	AD4	C	205	209	Right-handed 310
Helix 32	AD5	C	212	216	Right-handed 310
Helix 33	AD6	C	238	257	Right-handed alpha
Helix 34	AD7	C	265	271	Right-handed 310
Helix 35	AD8	C	272	291	Right-handed alpha
Helix 36	AD9	C	345	359	Right-handed alpha
Helix 37	AE1	C	376	394	Right-handed alpha
Helix 38	AE2	C	395	397	Right-handed 310
Helix 39	AE3	C	455	458	Right-handed 310
Helix 40	AE4	D	44	50	Right-handed alpha
Helix 41	AE5	D	55	62	Right-handed alpha
Helix 42	AE6	D	70	74	Right-handed 310
Helix 43	AE7	D	81	86	Right-handed alpha
Helix 44	AE8	D	91	101	Right-handed alpha
Helix 45	AE9	D	108	113	Right-handed 310
Helix 46	AF1	D	122	133	Right-handed alpha
Helix 47	AF2	D	168	181	Right-handed alpha
Helix 48	AF3	D	190	195	Right-handed 310
Helix 49	AF4	D	197	202	Right-handed 310
Helix 50	AF5	D	212	216	Right-handed 310
Helix 51	AF6	D	238	257	Right-handed alpha
Helix 52	AF7	D	265	271	Right-handed 310
Helix 53	AF8	D	272	291	Right-handed alpha
Helix 54	AF9	D	345	359	Right-handed alpha
Helix 55	AG1	D	376	394	Right-handed alpha
Helix 56	AG2	D	395	397	Right-handed 310
Helix 57	AG3	D	455	458	Right-handed 310
Helix 58	AG4	E	44	52	Right-handed alpha
Helix 59	AG5	E	55	62	Right-handed alpha
Helix 60	AG6	E	70	74	Right-handed 310
Helix 61	AG7	E	81	86	Right-handed alpha
Helix 62	AG8	E	91	101	Right-handed alpha
Helix 63	AG9	E	108	113	Right-handed 310
Helix 64	AH1	E	122	133	Right-handed alpha
Helix 65	AH2	E	168	181	Right-handed alpha
Helix 66	AH3	E	190	195	Right-handed 310
Helix 67	AH4	E	198	202	Right-handed 310
Helix 68	AH5	E	205	209	Right-handed 310
Helix 69	AH6	E	212	216	Right-handed 310
Helix 70	AH7	E	238	257	Right-handed alpha
Helix 71	AH8	E	265	271	Right-handed 310
Helix 72	AH9	E	272	291	Right-handed alpha
Helix 73	AI1	E	345	359	Right-handed alpha
Helix 74	AI2	E	376	394	Right-handed alpha
Helix 75	AI3	E	395	397	Right-handed 310
Helix 76	AI4	E	455	458	Right-handed 310

There are 20 sheets in PDB entry 7LNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	137	143	parallel
Strand 3	A	186	188	parallel
Strand 4	A	260	263	parallel
Strand 5	A	295	298	parallel
Strand 6	A	308	312	parallel
Strand 7	A	324	329	parallel
Strand 8	A	361	367	parallel
Strand 9	A	63	67	parallel
Strand 10	A	137	143	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	431	436	anti-parallel
Strand 3	A	439	444	anti-parallel
Strand 4	A	502	513	anti-parallel
Strand 5	A	524	533	anti-parallel
Strand 6	A	517	521	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	472	first strand
Strand 2	A	502	513	anti-parallel
Strand 3	A	524	533	anti-parallel
Strand 4	A	562	571	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	454	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	481	483	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	558	first strand
Strand 2	A	539	547	anti-parallel
Strand 3	A	581	585	anti-parallel
Strand 4	A	589	592	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	137	143	parallel
Strand 3	C	186	188	parallel
Strand 4	C	260	263	parallel
Strand 5	C	295	298	parallel
Strand 6	C	308	312	parallel
Strand 7	C	324	329	parallel
Strand 8	C	361	367	parallel
Strand 9	C	63	67	parallel
Strand 10	C	137	143	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	431	436	anti-parallel
Strand 3	C	439	444	anti-parallel
Strand 4	C	502	513	anti-parallel
Strand 5	C	524	533	anti-parallel
Strand 6	C	517	521	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	472	first strand
Strand 2	C	502	513	anti-parallel
Strand 3	C	524	533	anti-parallel
Strand 4	C	562	571	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	488	491	anti-parallel
Strand 3	C	481	483	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	558	first strand
Strand 2	C	539	547	anti-parallel
Strand 3	C	581	585	anti-parallel
Strand 4	C	589	592	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	137	143	parallel
Strand 3	D	186	188	parallel
Strand 4	D	260	263	parallel
Strand 5	D	295	298	parallel
Strand 6	D	308	312	parallel
Strand 7	D	324	329	parallel
Strand 8	D	361	367	parallel
Strand 9	D	63	67	parallel
Strand 10	D	137	143	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	408	first strand
Strand 2	D	431	436	anti-parallel
Strand 3	D	439	444	anti-parallel
Strand 4	D	502	513	anti-parallel
Strand 5	D	524	533	anti-parallel
Strand 6	D	517	521	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	472	first strand
Strand 2	D	502	513	anti-parallel
Strand 3	D	524	533	anti-parallel
Strand 4	D	562	571	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	454	first strand
Strand 2	D	488	491	anti-parallel
Strand 3	D	481	483	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	558	first strand
Strand 2	D	539	547	anti-parallel
Strand 3	D	581	585	anti-parallel
Strand 4	D	589	592	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	184	first strand
Strand 2	E	137	143	parallel
Strand 3	E	186	188	parallel
Strand 4	E	260	263	parallel
Strand 5	E	295	298	parallel
Strand 6	E	308	312	parallel
Strand 7	E	324	329	parallel
Strand 8	E	361	367	parallel
Strand 9	E	63	67	parallel
Strand 10	E	137	143	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	431	436	anti-parallel
Strand 3	E	439	444	anti-parallel
Strand 4	E	502	513	anti-parallel
Strand 5	E	524	533	anti-parallel
Strand 6	E	517	521	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	462	472	first strand
Strand 2	E	502	513	anti-parallel
Strand 3	E	524	533	anti-parallel
Strand 4	E	562	571	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	454	first strand
Strand 2	E	487	491	anti-parallel
Strand 3	E	481	484	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	550	558	first strand
Strand 2	E	539	547	anti-parallel
Strand 3	E	581	585	anti-parallel
Strand 4	E	589	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNP