Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LNT entry

There are 2 chains in PDB entry 7LNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 257
B
 SER -1MET 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7LNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
45 48Right-handed 310
Helix 4
AA4
A
49 57Right-handed alpha
Helix 5
AA5
A
58 61Right-handed 310
Helix 6
AA6
A
66 92Right-handed alpha
Helix 7
AA7
A
100 105Right-handed alpha
Helix 8
AA8
A
117 127Right-handed alpha
Helix 9
AA9
A
148 161Right-handed alpha
Helix 10
AB1
A
216 222Right-handed alpha
Helix 11
AB2
A
238 245Right-handed alpha
Helix 12
AB3
B
7 12Right-handed alpha
Helix 13
AB4
B
21 36Right-handed alpha
Helix 14
AB5
B
45 48Right-handed 310
Helix 15
AB6
B
49 57Right-handed alpha
Helix 16
AB7
B
58 61Right-handed 310
Helix 17
AB8
B
64 66Right-handed 310
Helix 18
AB9
B
67 92Right-handed alpha
Helix 19
AC1
B
100 105Right-handed alpha
Helix 20
AC2
B
117 127Right-handed alpha
Helix 21
AC3
B
148 161Right-handed alpha
Helix 22
AC4
B
192 199Right-handed alpha
Helix 23
AC5
B
210 221Right-handed alpha
Helix 24
AC6
B
238 245Right-handed alpha
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There are 9 sheets in PDB entry 7LNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
2 6parallel
Strand 3
A
164 169parallel
Strand 4
A
229 233parallel
Strand 5
A
252 254anti-parallel
Strand 6
A
190 191parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
129 131parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
111 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
143 147anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
187 188anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
2 6parallel
Strand 3
B
164 169parallel
Strand 4
B
228 233parallel
Strand 5
B
252 254anti-parallel
Strand 6
B
190 191parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
129 131parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
111 113anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
143 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il