Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LNV entry

There are 3 chains in PDB entry 7LNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	GLY 257
B	VAL -5	GLU 259
C	MET 1	GLY 256

There are 33 helices in PDB entry 7LNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	45	48	Right-handed 310
Helix 4	AA4	A	49	56	Right-handed alpha
Helix 5	AA5	A	57	61	Right-handed 310
Helix 6	AA6	A	66	92	Right-handed alpha
Helix 7	AA7	A	100	105	Right-handed alpha
Helix 8	AA8	A	117	127	Right-handed alpha
Helix 9	AA9	A	148	161	Right-handed alpha
Helix 10	AB1	A	238	246	Right-handed alpha
Helix 11	AB2	B	7	12	Right-handed alpha
Helix 12	AB3	B	21	36	Right-handed alpha
Helix 13	AB4	B	49	56	Right-handed alpha
Helix 14	AB5	B	57	61	Right-handed 310
Helix 15	AB6	B	66	92	Right-handed alpha
Helix 16	AB7	B	100	105	Right-handed alpha
Helix 17	AB8	B	117	127	Right-handed alpha
Helix 18	AB9	B	148	161	Right-handed alpha
Helix 19	AC1	B	192	200	Right-handed alpha
Helix 20	AC2	B	204	209	Right-handed alpha
Helix 21	AC3	B	211	221	Right-handed alpha
Helix 22	AC4	B	238	245	Right-handed alpha
Helix 23	AC5	C	7	12	Right-handed alpha
Helix 24	AC6	C	21	35	Right-handed alpha
Helix 25	AC7	C	46	56	Right-handed alpha
Helix 26	AC8	C	57	61	Right-handed 310
Helix 27	AC9	C	66	92	Right-handed alpha
Helix 28	AD1	C	100	105	Right-handed alpha
Helix 29	AD2	C	117	127	Right-handed alpha
Helix 30	AD3	C	148	161	Right-handed alpha
Helix 31	AD4	C	192	198	Right-handed alpha
Helix 32	AD5	C	211	222	Right-handed alpha
Helix 33	AD6	C	238	245	Right-handed alpha

There are 13 sheets in PDB entry 7LNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	1	6	parallel
Strand 3	A	164	169	parallel
Strand 4	A	228	233	parallel
Strand 5	A	252	254	anti-parallel
Strand 6	A	190	191	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	129	131	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	111	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	143	147	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	187	188	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	2	6	parallel
Strand 3	B	164	169	parallel
Strand 4	B	228	233	parallel
Strand 5	B	252	254	anti-parallel
Strand 6	B	190	191	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	129	131	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	112	113	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	143	147	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	2	6	parallel
Strand 3	C	164	169	parallel
Strand 4	C	228	233	parallel
Strand 5	C	252	254	anti-parallel
Strand 6	C	190	191	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	129	131	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	111	113	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	143	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNV