Analysis of interatomic Contacts of Structural Units in PDB entry:
7LNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LNX entry

There are 2 chains in PDB entry 7LNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 257
B
 PRO -4MET 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7LNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
45 48Right-handed 310
Helix 4
AA4
A
49 57Right-handed alpha
Helix 5
AA5
A
58 61Right-handed 310
Helix 6
AA6
A
66 92Right-handed alpha
Helix 7
AA7
A
100 104Right-handed 310
Helix 8
AA8
A
117 126Right-handed alpha
Helix 9
AA9
A
148 161Right-handed alpha
Helix 10
AB1
A
238 245Right-handed alpha
Helix 11
AB2
B
7 12Right-handed alpha
Helix 12
AB3
B
21 36Right-handed alpha
Helix 13
AB4
B
45 48Right-handed 310
Helix 14
AB5
B
49 57Right-handed alpha
Helix 15
AB6
B
58 61Right-handed 310
Helix 16
AB7
B
66 92Right-handed alpha
Helix 17
AB8
B
100 104Right-handed 310
Helix 18
AB9
B
117 127Right-handed alpha
Helix 19
AC1
B
148 161Right-handed alpha
Helix 20
AC2
B
212 221Right-handed alpha
Helix 21
AC3
B
238 246Right-handed alpha
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There are 8 sheets in PDB entry 7LNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
2 6parallel
Strand 3
A
164 169parallel
Strand 4
A
228 233parallel
Strand 5
A
252 254anti-parallel
Strand 6
A
190 191parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
129 131parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
111 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
144 147anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
2 6parallel
Strand 3
B
164 169parallel
Strand 4
B
228 233parallel
Strand 5
B
251 254anti-parallel
Strand 6
B
190 191parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
129 131parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
111 113anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
143 147anti-parallel
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