Analysis of interatomic Contacts of Structural Units in PDB entry:
7LO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LO6 entry

There are 12 chains in PDB entry 7LO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	ARG 503
B	GLY 514	ASN 656
C	ASN 33	ARG 503
D	GLY 514	LYS 655
E	ASN 33	ARG 504
F	PHE 519	ASP 659
G	ASP 1	THR 111
H	GLU 1	ALA 129
I	ASP 1	THR 111
J	GLU 1	ALA 129
K	ASP 1	THR 111
L	GLU 1	ALA 129

There are 35 helices in PDB entry 7LO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	73	Right-handed alpha
Helix 2	AA2	A	99	116	Right-handed alpha
Helix 3	AA3	A	335	353	Right-handed alpha
Helix 4	AA4	A	474	479	Right-handed 310
Helix 5	AA5	B	514	516	Right-handed 310
Helix 6	AA6	B	517	522	Right-handed alpha
Helix 7	AA7	B	529	544	Right-handed alpha
Helix 8	AA8	B	568	596	Right-handed alpha
Helix 9	AA9	B	619	624	Right-handed alpha
Helix 10	AB1	B	627	636	Right-handed alpha
Helix 11	AB2	B	638	656	Right-handed alpha
Helix 12	AB3	C	66	73	Right-handed alpha
Helix 13	AB4	C	99	116	Right-handed alpha
Helix 14	AB5	C	335	353	Right-handed alpha
Helix 15	AB6	C	474	483	Right-handed 310
Helix 16	AB7	D	516	523	Right-handed alpha
Helix 17	AB8	D	524	526	Right-handed 310
Helix 18	AB9	D	529	546	Right-handed alpha
Helix 19	AC1	D	562	596	Right-handed alpha
Helix 20	AC2	D	627	636	Right-handed alpha
Helix 21	AC3	D	638	653	Right-handed alpha
Helix 22	AC4	E	64	74	Right-handed alpha
Helix 23	AC5	E	99	113	Right-handed alpha
Helix 24	AC6	E	336	353	Right-handed alpha
Helix 25	AC7	F	521	527	Right-handed 310
Helix 26	AC8	F	529	541	Right-handed alpha
Helix 27	AC9	F	564	571	Right-handed alpha
Helix 28	AD1	F	572	596	Right-handed alpha
Helix 29	AD2	F	627	636	Right-handed alpha
Helix 30	AD3	F	638	656	Right-handed alpha
Helix 31	AD4	G	79	83	Right-handed 310
Helix 32	AD5	H	87	91	Right-handed 310
Helix 33	AD6	J	87	91	Right-handed 310
Helix 34	AD7	J	103	107	Right-handed 310
Helix 35	AD8	L	87	91	Right-handed 310

There are 40 sheets in PDB entry 7LO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	226	anti-parallel
Strand 4	A	243	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	432	434	anti-parallel
Strand 3	A	423	425	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	416	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	292	297	anti-parallel
Strand 4	A	444	449	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	418	420	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	469	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	495	499	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	487	491	anti-parallel
Strand 3	C	223	226	anti-parallel
Strand 4	C	243	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	120	122	anti-parallel
Strand 3	C	432	434	anti-parallel
Strand 4	C	423	424	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	284	285	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	292	298	anti-parallel
Strand 6	C	443	444	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	292	298	anti-parallel
Strand 4	C	447	449	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	358	361	anti-parallel
Strand 3	C	465	468	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	496	499	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	F	604	609	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	488	491	anti-parallel
Strand 3	E	223	226	anti-parallel
Strand 4	E	243	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	201	first strand
Strand 2	E	120	125	anti-parallel
Strand 3	E	432	434	anti-parallel
Strand 4	E	423	424	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	375	first strand
Strand 2	E	383	385	anti-parallel
Strand 3	E	413	420	anti-parallel
Strand 4	E	328	334	anti-parallel
Strand 5	E	294	298	anti-parallel
Strand 6	E	443	447	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	358	361	anti-parallel
Strand 3	E	465	468	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	63	67	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	106	107	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	45	49	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	85	90	anti-parallel
Strand 5	G	99	100	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	117	118	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	105	107	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	34	38	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	99	100	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	122	126	parallel
Strand 3	J	92	100	anti-parallel
Strand 4	J	32	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	57	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	122	126	parallel
Strand 3	J	92	100	anti-parallel
Strand 4	J	117	118	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	48	first strand
Strand 2	K	35	38	anti-parallel
Strand 3	K	85	86	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	67	first strand
Strand 2	K	70	72	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	125	126	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	20	first strand
Strand 2	L	78	84	anti-parallel
Strand 3	L	68	73	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	45	52	anti-parallel
Strand 3	L	32	39	anti-parallel
Strand 4	L	93	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LO6