Analysis of interatomic Contacts of Structural Units in PDB entry:
7LOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LOO entry

There are 4 chains in PDB entry 7LOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	GLY 381
B	HIS 3	ALA 380
Q	HIS 3	ALA 380
R	HIS 3	ARG 161

There are 58 helices in PDB entry 7LOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	34	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	80	83	Right-handed 310
Helix 4	AA4	A	99	107	Right-handed alpha
Helix 5	AA5	A	110	114	Right-handed 310
Helix 6	AA6	A	135	154	Right-handed alpha
Helix 7	AA7	A	194	206	Right-handed alpha
Helix 8	AA8	A	212	216	Right-handed 310
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	269	288	Right-handed alpha
Helix 11	AB2	A	321	333	Right-handed alpha
Helix 12	AB3	A	336	344	Right-handed alpha
Helix 13	AB4	A	351	356	Right-handed 310
Helix 14	AB5	A	365	369	Right-handed 310
Helix 15	AB6	A	372	380	Right-handed alpha
Helix 16	AB7	B	14	34	Right-handed alpha
Helix 17	AB8	B	63	76	Right-handed alpha
Helix 18	AB9	B	80	83	Right-handed 310
Helix 19	AC1	B	99	107	Right-handed alpha
Helix 20	AC2	B	110	114	Right-handed 310
Helix 21	AC3	B	135	154	Right-handed alpha
Helix 22	AC4	B	194	206	Right-handed alpha
Helix 23	AC5	B	233	237	Right-handed 310
Helix 24	AC6	B	269	288	Right-handed alpha
Helix 25	AC7	B	321	333	Right-handed alpha
Helix 26	AC8	B	336	345	Right-handed alpha
Helix 27	AC9	B	351	355	Right-handed 310
Helix 28	AD1	B	365	369	Right-handed 310
Helix 29	AD2	B	372	379	Right-handed alpha
Helix 30	AD3	Q	14	34	Right-handed alpha
Helix 31	AD4	Q	63	76	Right-handed alpha
Helix 32	AD5	Q	80	83	Right-handed 310
Helix 33	AD6	Q	99	107	Right-handed alpha
Helix 34	AD7	Q	110	114	Right-handed 310
Helix 35	AD8	Q	135	154	Right-handed alpha
Helix 36	AD9	Q	194	206	Right-handed alpha
Helix 37	AE1	Q	212	216	Right-handed 310
Helix 38	AE2	Q	233	237	Right-handed 310
Helix 39	AE3	Q	269	288	Right-handed alpha
Helix 40	AE4	Q	321	333	Right-handed alpha
Helix 41	AE5	Q	336	345	Right-handed alpha
Helix 42	AE6	Q	351	356	Right-handed 310
Helix 43	AE7	Q	365	369	Right-handed 310
Helix 44	AE8	Q	372	380	Right-handed alpha
Helix 45	AE9	R	14	34	Right-handed alpha
Helix 46	AF1	R	63	76	Right-handed alpha
Helix 47	AF2	R	80	83	Right-handed 310
Helix 48	AF3	R	99	107	Right-handed alpha
Helix 49	AF4	R	110	114	Right-handed 310
Helix 50	AF5	R	135	154	Right-handed alpha
Helix 51	AF6	R	194	206	Right-handed alpha
Helix 52	AF7	R	233	237	Right-handed 310
Helix 53	AF8	R	269	288	Right-handed alpha
Helix 54	AF9	R	321	333	Right-handed alpha
Helix 55	AG1	R	336	345	Right-handed alpha
Helix 56	AG2	R	351	355	Right-handed 310
Helix 57	AG3	R	365	369	Right-handed 310
Helix 58	AG4	R	373	378	Right-handed alpha

There are 16 sheets in PDB entry 7LOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	10	first strand
Strand 2	A	160	173	anti-parallel
Strand 3	A	176	189	anti-parallel
Strand 4	A	221	224	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	96	first strand
Strand 2	A	49	57	parallel
Strand 3	A	38	46	anti-parallel
Strand 4	A	240	241	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	84	85	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	127	first strand
Strand 2	A	293	300	anti-parallel
Strand 3	A	309	313	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	160	173	anti-parallel
Strand 3	B	176	189	anti-parallel
Strand 4	B	221	224	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	96	first strand
Strand 2	B	49	57	parallel
Strand 3	B	38	46	anti-parallel
Strand 4	B	240	241	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	84	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	127	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	10	first strand
Strand 2	Q	160	173	anti-parallel
Strand 3	Q	176	189	anti-parallel
Strand 4	Q	221	224	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	90	96	first strand
Strand 2	Q	49	57	parallel
Strand 3	Q	38	46	anti-parallel
Strand 4	Q	240	241	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	78	79	first strand
Strand 2	Q	84	85	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	127	first strand
Strand 2	Q	293	300	anti-parallel
Strand 3	Q	309	313	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	10	first strand
Strand 2	R	160	173	anti-parallel
Strand 3	R	176	189	anti-parallel
Strand 4	R	221	224	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	96	first strand
Strand 2	R	49	57	parallel
Strand 3	R	38	46	anti-parallel
Strand 4	R	240	241	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	78	79	first strand
Strand 2	R	84	85	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	120	127	first strand
Strand 2	R	293	300	anti-parallel
Strand 3	R	309	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LOO