Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LPB entry

There are 4 chains in PDB entry 7LPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 113	TRP 752
B	ASP 113	TRP 752
C	ASP 113	TRP 752
D	ASP 113	TRP 752

There are116 helices in PDB entry 7LPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	124	Right-handed alpha
Helix 2	AA2	A	126	139	Right-handed alpha
Helix 3	AA3	A	156	164	Right-handed alpha
Helix 4	AA4	A	171	183	Right-handed alpha
Helix 5	AA5	A	203	211	Right-handed alpha
Helix 6	AA6	A	213	223	Right-handed alpha
Helix 7	AA7	A	250	257	Right-handed alpha
Helix 8	AA8	A	260	269	Right-handed alpha
Helix 9	AA9	A	286	295	Right-handed alpha
Helix 10	AB1	A	298	320	Right-handed alpha
Helix 11	AB2	A	335	343	Right-handed alpha
Helix 12	AB3	A	345	354	Right-handed alpha
Helix 13	AB4	A	362	366	Right-handed 310
Helix 14	AB5	A	394	401	Right-handed alpha
Helix 15	AB6	A	409	414	Right-handed 310
Helix 16	AB7	A	415	430	Right-handed alpha
Helix 17	AB8	A	430	454	Right-handed alpha
Helix 18	AB9	A	468	499	Right-handed alpha
Helix 19	AC1	A	505	510	Right-handed alpha
Helix 20	AC2	A	512	531	Right-handed alpha
Helix 21	AC3	A	536	552	Right-handed alpha
Helix 22	AC4	A	553	556	Right-handed 310
Helix 23	AC5	A	559	597	Right-handed alpha
Helix 24	AC6	A	629	639	Right-handed alpha
Helix 25	AC7	A	640	643	Right-handed 310
Helix 26	AC8	A	655	670	Right-handed alpha
Helix 27	AC9	A	672	690	Right-handed alpha
Helix 28	AD1	A	691	712	Right-handed alpha
Helix 29	AD2	A	712	717	Right-handed alpha
Helix 30	AD3	B	114	124	Right-handed alpha
Helix 31	AD4	B	126	139	Right-handed alpha
Helix 32	AD5	B	156	164	Right-handed alpha
Helix 33	AD6	B	171	183	Right-handed alpha
Helix 34	AD7	B	203	211	Right-handed alpha
Helix 35	AD8	B	213	223	Right-handed alpha
Helix 36	AD9	B	250	257	Right-handed alpha
Helix 37	AE1	B	260	269	Right-handed alpha
Helix 38	AE2	B	286	295	Right-handed alpha
Helix 39	AE3	B	298	320	Right-handed alpha
Helix 40	AE4	B	335	343	Right-handed alpha
Helix 41	AE5	B	345	354	Right-handed alpha
Helix 42	AE6	B	362	366	Right-handed 310
Helix 43	AE7	B	394	401	Right-handed alpha
Helix 44	AE8	B	409	414	Right-handed 310
Helix 45	AE9	B	415	430	Right-handed alpha
Helix 46	AF1	B	430	454	Right-handed alpha
Helix 47	AF2	B	468	499	Right-handed alpha
Helix 48	AF3	B	505	510	Right-handed alpha
Helix 49	AF4	B	512	531	Right-handed alpha
Helix 50	AF5	B	536	552	Right-handed alpha
Helix 51	AF6	B	553	556	Right-handed 310
Helix 52	AF7	B	559	597	Right-handed alpha
Helix 53	AF8	B	629	639	Right-handed alpha
Helix 54	AF9	B	640	643	Right-handed 310
Helix 55	AG1	B	655	670	Right-handed alpha
Helix 56	AG2	B	672	690	Right-handed alpha
Helix 57	AG3	B	691	712	Right-handed alpha
Helix 58	AG4	B	712	717	Right-handed alpha
Helix 59	AG5	C	114	124	Right-handed alpha
Helix 60	AG6	C	126	139	Right-handed alpha
Helix 61	AG7	C	156	164	Right-handed alpha
Helix 62	AG8	C	171	183	Right-handed alpha
Helix 63	AG9	C	203	211	Right-handed alpha
Helix 64	AH1	C	213	223	Right-handed alpha
Helix 65	AH2	C	250	257	Right-handed alpha
Helix 66	AH3	C	260	269	Right-handed alpha
Helix 67	AH4	C	286	295	Right-handed alpha
Helix 68	AH5	C	298	320	Right-handed alpha
Helix 69	AH6	C	335	343	Right-handed alpha
Helix 70	AH7	C	345	354	Right-handed alpha
Helix 71	AH8	C	362	366	Right-handed 310
Helix 72	AH9	C	394	401	Right-handed alpha
Helix 73	AI1	C	409	414	Right-handed 310
Helix 74	AI2	C	415	430	Right-handed alpha
Helix 75	AI3	C	430	454	Right-handed alpha
Helix 76	AI4	C	468	499	Right-handed alpha
Helix 77	AI5	C	505	510	Right-handed alpha
Helix 78	AI6	C	512	531	Right-handed alpha
Helix 79	AI7	C	536	552	Right-handed alpha
Helix 80	AI8	C	553	556	Right-handed 310
Helix 81	AI9	C	559	597	Right-handed alpha
Helix 82	AJ1	C	629	639	Right-handed alpha
Helix 83	AJ2	C	640	643	Right-handed 310
Helix 84	AJ3	C	655	670	Right-handed alpha
Helix 85	AJ4	C	672	690	Right-handed alpha
Helix 86	AJ5	C	691	712	Right-handed alpha
Helix 87	AJ6	C	712	717	Right-handed alpha
Helix 88	AJ7	D	114	124	Right-handed alpha
Helix 89	AJ8	D	126	139	Right-handed alpha
Helix 90	AJ9	D	156	164	Right-handed alpha
Helix 91	AK1	D	171	183	Right-handed alpha
Helix 92	AK2	D	203	211	Right-handed alpha
Helix 93	AK3	D	213	223	Right-handed alpha
Helix 94	AK4	D	250	257	Right-handed alpha
Helix 95	AK5	D	260	269	Right-handed alpha
Helix 96	AK6	D	286	295	Right-handed alpha
Helix 97	AK7	D	298	320	Right-handed alpha
Helix 98	AK8	D	335	343	Right-handed alpha
Helix 99	AK9	D	345	354	Right-handed alpha
Helix 100	AL1	D	362	366	Right-handed 310
Helix 101	AL2	D	394	401	Right-handed alpha
Helix 102	AL3	D	409	414	Right-handed 310
Helix 103	AL4	D	415	430	Right-handed alpha
Helix 104	AL5	D	430	454	Right-handed alpha
Helix 105	AL6	D	468	499	Right-handed alpha
Helix 106	AL7	D	505	510	Right-handed alpha
Helix 107	AL8	D	512	531	Right-handed alpha
Helix 108	AL9	D	536	552	Right-handed alpha
Helix 109	AM1	D	553	556	Right-handed 310
Helix 110	AM2	D	559	597	Right-handed alpha
Helix 111	AM3	D	629	639	Right-handed alpha
Helix 112	AM4	D	640	643	Right-handed 310
Helix 113	AM5	D	655	670	Right-handed alpha
Helix 114	AM6	D	672	690	Right-handed alpha
Helix 115	AM7	D	691	712	Right-handed alpha
Helix 116	AM8	D	712	717	Right-handed alpha

There are 8 sheets in PDB entry 7LPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	377	382	anti-parallel
Strand 3	A	744	747	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	727	first strand
Strand 2	A	738	741	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	377	382	anti-parallel
Strand 3	B	744	747	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	727	first strand
Strand 2	B	738	741	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	372	first strand
Strand 2	C	377	382	anti-parallel
Strand 3	C	744	747	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	727	first strand
Strand 2	C	738	741	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	372	first strand
Strand 2	D	377	382	anti-parallel
Strand 3	D	744	747	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	724	727	first strand
Strand 2	D	738	741	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPB