Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LPD entry

There are 4 chains in PDB entry 7LPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 204	TRP 752
B	ALA 204	TRP 752
C	ALA 204	TRP 752
D	ALA 204	TRP 752

There are108 helices in PDB entry 7LPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	204	211	Right-handed alpha
Helix 2	AA2	A	213	222	Right-handed alpha
Helix 3	AA3	A	250	258	Right-handed alpha
Helix 4	AA4	A	260	270	Right-handed alpha
Helix 5	AA5	A	286	295	Right-handed alpha
Helix 6	AA6	A	298	320	Right-handed alpha
Helix 7	AA7	A	324	328	Right-handed 310
Helix 8	AA8	A	335	344	Right-handed alpha
Helix 9	AA9	A	345	354	Right-handed alpha
Helix 10	AB1	A	359	363	Right-handed 310
Helix 11	AB2	A	394	401	Right-handed alpha
Helix 12	AB3	A	408	413	Right-handed alpha
Helix 13	AB4	A	415	429	Right-handed alpha
Helix 14	AB5	A	429	454	Right-handed alpha
Helix 15	AB6	A	468	500	Right-handed alpha
Helix 16	AB7	A	505	510	Right-handed alpha
Helix 17	AB8	A	510	532	Right-handed alpha
Helix 18	AB9	A	536	551	Right-handed alpha
Helix 19	AC1	A	552	558	Right-handed 310
Helix 20	AC2	A	560	575	Right-handed alpha
Helix 21	AC3	A	575	599	Right-handed alpha
Helix 22	AC4	A	629	642	Right-handed alpha
Helix 23	AC5	A	655	670	Right-handed alpha
Helix 24	AC6	A	673	690	Right-handed alpha
Helix 25	AC7	A	692	711	Right-handed alpha
Helix 26	AC8	A	713	720	Right-handed alpha
Helix 27	AC9	A	749	752	Right-handed 310
Helix 28	AD1	B	205	211	Right-handed alpha
Helix 29	AD2	B	213	222	Right-handed alpha
Helix 30	AD3	B	250	258	Right-handed alpha
Helix 31	AD4	B	260	270	Right-handed alpha
Helix 32	AD5	B	286	295	Right-handed alpha
Helix 33	AD6	B	298	320	Right-handed alpha
Helix 34	AD7	B	324	328	Right-handed 310
Helix 35	AD8	B	335	344	Right-handed alpha
Helix 36	AD9	B	345	354	Right-handed alpha
Helix 37	AE1	B	359	363	Right-handed 310
Helix 38	AE2	B	394	401	Right-handed alpha
Helix 39	AE3	B	408	413	Right-handed alpha
Helix 40	AE4	B	415	429	Right-handed alpha
Helix 41	AE5	B	429	454	Right-handed alpha
Helix 42	AE6	B	468	500	Right-handed alpha
Helix 43	AE7	B	505	510	Right-handed alpha
Helix 44	AE8	B	510	532	Right-handed alpha
Helix 45	AE9	B	536	551	Right-handed alpha
Helix 46	AF1	B	552	558	Right-handed 310
Helix 47	AF2	B	560	575	Right-handed alpha
Helix 48	AF3	B	575	599	Right-handed alpha
Helix 49	AF4	B	629	642	Right-handed alpha
Helix 50	AF5	B	655	670	Right-handed alpha
Helix 51	AF6	B	673	690	Right-handed alpha
Helix 52	AF7	B	692	711	Right-handed alpha
Helix 53	AF8	B	713	720	Right-handed alpha
Helix 54	AF9	B	749	752	Right-handed 310
Helix 55	AG1	C	205	211	Right-handed alpha
Helix 56	AG2	C	213	222	Right-handed alpha
Helix 57	AG3	C	250	258	Right-handed alpha
Helix 58	AG4	C	260	270	Right-handed alpha
Helix 59	AG5	C	286	295	Right-handed alpha
Helix 60	AG6	C	298	320	Right-handed alpha
Helix 61	AG7	C	324	328	Right-handed 310
Helix 62	AG8	C	335	344	Right-handed alpha
Helix 63	AG9	C	345	354	Right-handed alpha
Helix 64	AH1	C	359	363	Right-handed 310
Helix 65	AH2	C	394	401	Right-handed alpha
Helix 66	AH3	C	408	413	Right-handed alpha
Helix 67	AH4	C	415	429	Right-handed alpha
Helix 68	AH5	C	429	454	Right-handed alpha
Helix 69	AH6	C	468	500	Right-handed alpha
Helix 70	AH7	C	505	510	Right-handed alpha
Helix 71	AH8	C	510	532	Right-handed alpha
Helix 72	AH9	C	536	551	Right-handed alpha
Helix 73	AI1	C	552	558	Right-handed 310
Helix 74	AI2	C	560	575	Right-handed alpha
Helix 75	AI3	C	575	599	Right-handed alpha
Helix 76	AI4	C	629	642	Right-handed alpha
Helix 77	AI5	C	655	670	Right-handed alpha
Helix 78	AI6	C	673	690	Right-handed alpha
Helix 79	AI7	C	692	711	Right-handed alpha
Helix 80	AI8	C	713	720	Right-handed alpha
Helix 81	AI9	C	749	752	Right-handed 310
Helix 82	AJ1	D	205	211	Right-handed alpha
Helix 83	AJ2	D	213	222	Right-handed alpha
Helix 84	AJ3	D	250	258	Right-handed alpha
Helix 85	AJ4	D	260	270	Right-handed alpha
Helix 86	AJ5	D	286	295	Right-handed alpha
Helix 87	AJ6	D	298	320	Right-handed alpha
Helix 88	AJ7	D	324	328	Right-handed 310
Helix 89	AJ8	D	335	344	Right-handed alpha
Helix 90	AJ9	D	345	354	Right-handed alpha
Helix 91	AK1	D	359	363	Right-handed 310
Helix 92	AK2	D	394	401	Right-handed alpha
Helix 93	AK3	D	408	413	Right-handed alpha
Helix 94	AK4	D	415	429	Right-handed alpha
Helix 95	AK5	D	429	454	Right-handed alpha
Helix 96	AK6	D	468	500	Right-handed alpha
Helix 97	AK7	D	505	510	Right-handed alpha
Helix 98	AK8	D	510	532	Right-handed alpha
Helix 99	AK9	D	536	551	Right-handed alpha
Helix 100	AL1	D	552	558	Right-handed 310
Helix 101	AL2	D	560	575	Right-handed alpha
Helix 102	AL3	D	575	599	Right-handed alpha
Helix 103	AL4	D	629	642	Right-handed alpha
Helix 104	AL5	D	655	670	Right-handed alpha
Helix 105	AL6	D	673	690	Right-handed alpha
Helix 106	AL7	D	692	711	Right-handed alpha
Helix 107	AL8	D	713	720	Right-handed alpha
Helix 108	AL9	D	749	752	Right-handed 310

There are 4 sheets in PDB entry 7LPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	377	382	anti-parallel
Strand 3	A	738	747	anti-parallel
Strand 4	A	724	727	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	377	382	anti-parallel
Strand 3	B	738	747	anti-parallel
Strand 4	B	724	727	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	372	first strand
Strand 2	C	377	382	anti-parallel
Strand 3	C	738	747	anti-parallel
Strand 4	C	724	727	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	372	first strand
Strand 2	D	377	382	anti-parallel
Strand 3	D	738	747	anti-parallel
Strand 4	D	724	727	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPD