Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LPP entry

There are 2 chains in PDB entry 7LPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	ARG 830
B	PRO 4	MET 527

There are134 helices in PDB entry 7LPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed 310
Helix 2	AA2	A	59	66	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	116	133	Right-handed alpha
Helix 6	AA6	A	147	151	Right-handed 310
Helix 7	AA7	A	157	163	Right-handed alpha
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	189	193	Right-handed 310
Helix 10	AB1	A	196	203	Right-handed 310
Helix 11	AB2	A	204	221	Right-handed alpha
Helix 12	AB3	A	231	254	Right-handed alpha
Helix 13	AB4	A	255	258	Right-handed 310
Helix 14	AB5	A	297	306	Right-handed alpha
Helix 15	AB6	A	340	347	Right-handed alpha
Helix 16	AB7	A	348	353	Right-handed alpha
Helix 17	AB8	A	365	370	Right-handed alpha
Helix 18	AB9	A	398	403	Right-handed alpha
Helix 19	AC1	A	403	419	Right-handed alpha
Helix 20	AC2	A	438	443	Right-handed alpha
Helix 21	AC3	A	454	461	Right-handed alpha
Helix 22	AC4	A	469	475	Right-handed alpha
Helix 23	AC5	A	480	483	Right-handed 310
Helix 24	AC6	A	488	510	Right-handed alpha
Helix 25	AC7	A	530	534	Right-handed 310
Helix 26	AC8	A	536	540	Right-handed 310
Helix 27	AC9	A	545	560	Right-handed alpha
Helix 28	AD1	A	593	597	Right-handed 310
Helix 29	AD2	A	640	647	Right-handed alpha
Helix 30	AD3	A	650	656	Right-handed alpha
Helix 31	AD4	A	660	665	Right-handed alpha
Helix 32	AD5	A	711	716	Right-handed alpha
Helix 33	AD6	A	720	782	Right-handed alpha
Helix 34	AD7	B	43	48	Right-handed 310
Helix 35	AD8	B	59	66	Right-handed alpha
Helix 36	AD9	B	81	93	Right-handed alpha
Helix 37	AE1	B	104	108	Right-handed alpha
Helix 38	AE2	B	116	133	Right-handed alpha
Helix 39	AE3	B	147	151	Right-handed 310
Helix 40	AE4	B	157	163	Right-handed alpha
Helix 41	AE5	B	166	168	Right-handed 310
Helix 42	AE6	B	169	174	Right-handed alpha
Helix 43	AE7	B	178	182	Right-handed 310
Helix 44	AE8	B	189	193	Right-handed 310
Helix 45	AE9	B	196	203	Right-handed 310
Helix 46	AF1	B	204	221	Right-handed alpha
Helix 47	AF2	B	231	254	Right-handed alpha
Helix 48	AF3	B	255	258	Right-handed 310
Helix 49	AF4	B	297	306	Right-handed alpha
Helix 50	AF5	B	340	347	Right-handed alpha
Helix 51	AF6	B	348	353	Right-handed alpha
Helix 52	AF7	B	367	371	Right-handed 310
Helix 53	AF8	B	398	403	Right-handed alpha
Helix 54	AF9	B	403	419	Right-handed alpha
Helix 55	AG1	B	438	443	Right-handed alpha
Helix 56	AG2	B	454	461	Right-handed alpha
Helix 57	AG3	B	469	475	Right-handed alpha
Helix 58	AG4	B	480	483	Right-handed 310
Helix 59	AG5	B	488	511	Right-handed alpha
Helix 60	AG6	B	530	534	Right-handed 310
Helix 61	AG7	B	536	540	Right-handed 310
Helix 62	AG8	B	545	559	Right-handed alpha
Helix 63	AG9	B	593	597	Right-handed 310
Helix 64	AH1	B	640	647	Right-handed alpha
Helix 65	AH2	B	650	656	Right-handed alpha
Helix 66	AH3	B	660	665	Right-handed alpha
Helix 67	AH4	B	711	716	Right-handed alpha
Helix 68	AH5	C	43	48	Right-handed 310
Helix 69	AH6	C	59	66	Right-handed alpha
Helix 70	AH7	C	81	93	Right-handed alpha
Helix 71	AH8	C	104	109	Right-handed alpha
Helix 72	AH9	C	116	133	Right-handed alpha
Helix 73	AI1	C	147	151	Right-handed 310
Helix 74	AI2	C	157	163	Right-handed alpha
Helix 75	AI3	C	166	170	Right-handed 310
Helix 76	AI4	C	178	182	Right-handed 310
Helix 77	AI5	C	189	193	Right-handed 310
Helix 78	AI6	C	197	203	Right-handed 310
Helix 79	AI7	C	204	221	Right-handed alpha
Helix 80	AI8	C	231	254	Right-handed alpha
Helix 81	AI9	C	255	258	Right-handed 310
Helix 82	AJ1	C	297	306	Right-handed alpha
Helix 83	AJ2	C	340	348	Right-handed alpha
Helix 84	AJ3	C	348	353	Right-handed alpha
Helix 85	AJ4	C	365	370	Right-handed alpha
Helix 86	AJ5	C	384	388	Right-handed 310
Helix 87	AJ6	C	398	403	Right-handed alpha
Helix 88	AJ7	C	403	419	Right-handed alpha
Helix 89	AJ8	C	438	443	Right-handed alpha
Helix 90	AJ9	C	454	461	Right-handed alpha
Helix 91	AK1	C	469	475	Right-handed alpha
Helix 92	AK2	C	481	483	Right-handed 310
Helix 93	AK3	C	488	511	Right-handed alpha
Helix 94	AK4	C	536	540	Right-handed 310
Helix 95	AK5	C	545	558	Right-handed alpha
Helix 96	AK6	C	593	597	Right-handed 310
Helix 97	AK7	C	640	647	Right-handed alpha
Helix 98	AK8	C	650	656	Right-handed alpha
Helix 99	AK9	C	660	665	Right-handed alpha
Helix 100	AL1	C	711	716	Right-handed alpha
Helix 101	AL2	D	43	48	Right-handed 310
Helix 102	AL3	D	59	66	Right-handed alpha
Helix 103	AL4	D	81	93	Right-handed alpha
Helix 104	AL5	D	103	108	Right-handed alpha
Helix 105	AL6	D	116	133	Right-handed alpha
Helix 106	AL7	D	147	151	Right-handed 310
Helix 107	AL8	D	157	163	Right-handed alpha
Helix 108	AL9	D	166	170	Right-handed 310
Helix 109	AM1	D	178	182	Right-handed 310
Helix 110	AM2	D	189	193	Right-handed 310
Helix 111	AM3	D	196	203	Right-handed 310
Helix 112	AM4	D	204	221	Right-handed alpha
Helix 113	AM5	D	231	254	Right-handed alpha
Helix 114	AM6	D	255	258	Right-handed 310
Helix 115	AM7	D	297	306	Right-handed alpha
Helix 116	AM8	D	340	348	Right-handed alpha
Helix 117	AM9	D	348	353	Right-handed alpha
Helix 118	AN1	D	367	371	Right-handed 310
Helix 119	AN2	D	382	386	Right-handed 310
Helix 120	AN3	D	398	403	Right-handed alpha
Helix 121	AN4	D	403	419	Right-handed alpha
Helix 122	AN5	D	438	443	Right-handed alpha
Helix 123	AN6	D	454	461	Right-handed alpha
Helix 124	AN7	D	469	475	Right-handed alpha
Helix 125	AN8	D	480	483	Right-handed 310
Helix 126	AN9	D	488	511	Right-handed alpha
Helix 127	AO1	D	530	534	Right-handed 310
Helix 128	AO2	D	536	540	Right-handed 310
Helix 129	AO3	D	545	558	Right-handed alpha
Helix 130	AO4	D	593	597	Right-handed 310
Helix 131	AO5	D	641	645	Right-handed alpha
Helix 132	AO6	D	650	656	Right-handed alpha
Helix 133	AO7	D	660	665	Right-handed alpha
Helix 134	AO8	D	711	716	Right-handed alpha

There are 29 sheets in PDB entry 7LPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	34	35	anti-parallel
Strand 3	A	668	672	anti-parallel
Strand 4	A	706	709	anti-parallel
Strand 5	A	803	807	anti-parallel
Strand 6	A	796	800	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	448	first strand
Strand 2	A	423	426	parallel
Strand 3	A	262	266	parallel
Strand 4	A	136	142	parallel
Strand 5	A	97	103	parallel
Strand 6	A	38	42	parallel
Strand 7	A	566	569	parallel
Strand 8	A	517	518	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	229	230	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	310	318	anti-parallel
Strand 3	A	321	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	379	380	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	392	396	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	485	487	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	681	first strand
Strand 2	A	688	695	anti-parallel
Strand 3	A	815	824	anti-parallel
Strand 4	A	788	792	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	34	35	anti-parallel
Strand 3	B	668	672	anti-parallel
Strand 4	B	706	709	anti-parallel
Strand 5	B	803	807	anti-parallel
Strand 6	B	796	800	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	423	426	parallel
Strand 3	B	262	266	parallel
Strand 4	B	136	142	parallel
Strand 5	B	97	103	parallel
Strand 6	B	38	42	parallel
Strand 7	B	566	569	parallel
Strand 8	B	517	521	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	229	230	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	310	318	anti-parallel
Strand 3	B	321	330	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	379	380	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	485	487	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	681	first strand
Strand 2	B	688	694	anti-parallel
Strand 3	B	816	824	anti-parallel
Strand 4	B	788	792	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	27	29	anti-parallel
Strand 3	C	34	35	anti-parallel
Strand 4	C	668	672	anti-parallel
Strand 5	C	706	709	anti-parallel
Strand 6	C	803	807	anti-parallel
Strand 7	C	796	800	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	448	first strand
Strand 2	C	423	426	parallel
Strand 3	C	262	266	parallel
Strand 4	C	136	142	parallel
Strand 5	C	97	103	parallel
Strand 6	C	38	42	parallel
Strand 7	C	566	569	parallel
Strand 8	C	517	521	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	229	230	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	C	321	327	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	379	380	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	468	first strand
Strand 2	C	485	487	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	675	681	first strand
Strand 2	C	688	695	anti-parallel
Strand 3	C	815	824	anti-parallel
Strand 4	C	788	792	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	34	35	anti-parallel
Strand 3	D	668	672	anti-parallel
Strand 4	D	706	709	anti-parallel
Strand 5	D	803	807	anti-parallel
Strand 6	D	796	800	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	448	first strand
Strand 2	D	423	426	parallel
Strand 3	D	262	266	parallel
Strand 4	D	136	141	parallel
Strand 5	D	97	102	parallel
Strand 6	D	38	42	parallel
Strand 7	D	566	569	parallel
Strand 8	D	517	521	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	229	230	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	295	first strand
Strand 2	D	310	318	anti-parallel
Strand 3	D	321	330	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	379	380	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	468	first strand
Strand 2	D	485	487	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	675	681	first strand
Strand 2	D	688	695	anti-parallel
Strand 3	D	815	824	anti-parallel
Strand 4	D	788	792	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPP