Analysis of interatomic Contacts of Structural Units in PDB entry:
7LPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LPY entry

There are 2 chains in PDB entry 7LPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 136LYS 335
B
 MET 136LYS 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7LPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
197 205Right-handed alpha
Helix 2
AA2
A
207 212Right-handed alpha
Helix 3
AA3
A
216 232Right-handed alpha
Helix 4
AA4
A
247 252Right-handed alpha
Helix 5
AA5
A
252 262Right-handed alpha
Helix 6
AA6
A
266 270Right-handed 310
Helix 7
AA7
A
275 284Right-handed alpha
Helix 8
AA8
A
289 298Right-handed alpha
Helix 9
AA9
A
308 326Right-handed alpha
Helix 10
AB1
B
197 205Right-handed alpha
Helix 11
AB2
B
207 211Right-handed 310
Helix 12
AB3
B
216 231Right-handed alpha
Helix 13
AB4
B
247 252Right-handed alpha
Helix 14
AB5
B
252 262Right-handed alpha
Helix 15
AB6
B
266 270Right-handed 310
Helix 16
AB7
B
275 284Right-handed alpha
Helix 17
AB8
B
289 299Right-handed alpha
Helix 18
AB9
B
308 326Right-handed alpha
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There are 4 sheets in PDB entry 7LPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
180 187anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
145 149anti-parallel
Strand 4
A
240 244parallel
Strand 5
A
272 274parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
165 174anti-parallel
Strand 3
B
180 187anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
165 174anti-parallel
Strand 3
B
145 149anti-parallel
Strand 4
B
240 244parallel
Strand 5
B
272 274parallel
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