Analysis of interatomic Contacts of Structural Units in PDB entry:
7LR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LR8 entry

There are 2 chains in PDB entry 7LR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13HIS 425
B
 ARG 12LEU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7LR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 33Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
58 63Right-handed alpha
Helix 4
AA4
A
70 87Right-handed alpha
Helix 5
AA5
A
107 115Right-handed 310
Helix 6
AA6
A
121 140Right-handed alpha
Helix 7
AA7
A
153 158Right-handed 310
Helix 8
AA8
A
169 188Right-handed alpha
Helix 9
AA9
A
199 204Right-handed alpha
Helix 10
AB1
A
210 217Right-handed alpha
Helix 11
AB2
A
230 236Right-handed alpha
Helix 12
AB3
A
239 244Right-handed alpha
Helix 13
AB4
A
244 254Right-handed alpha
Helix 14
AB5
A
255 257Right-handed 310
Helix 15
AB6
A
277 279Right-handed 310
Helix 16
AB7
A
280 293Right-handed alpha
Helix 17
AB8
A
317 322Right-handed alpha
Helix 18
AB9
A
333 340Right-handed alpha
Helix 19
AC1
A
345 350Right-handed alpha
Helix 20
AC2
A
372 377Right-handed 310
Helix 21
AC3
A
380 392Right-handed alpha
Helix 22
AC4
A
402 404Right-handed 310
Helix 23
AC5
A
406 413Right-handed alpha
Helix 24
AC6
A
420 425Right-handed alpha
Helix 25
AC7
B
25 33Right-handed 310
Helix 26
AC8
B
34 47Right-handed alpha
Helix 27
AC9
B
58 63Right-handed alpha
Helix 28
AD1
B
70 87Right-handed alpha
Helix 29
AD2
B
107 115Right-handed 310
Helix 30
AD3
B
121 140Right-handed alpha
Helix 31
AD4
B
153 158Right-handed 310
Helix 32
AD5
B
169 188Right-handed alpha
Helix 33
AD6
B
199 204Right-handed alpha
Helix 34
AD7
B
210 217Right-handed alpha
Helix 35
AD8
B
230 236Right-handed alpha
Helix 36
AD9
B
239 254Right-handed alpha
Helix 37
AE1
B
255 257Right-handed 310
Helix 38
AE2
B
277 279Right-handed 310
Helix 39
AE3
B
280 294Right-handed alpha
Helix 40
AE4
B
317 322Right-handed alpha
Helix 41
AE5
B
333 350Right-handed alpha
Helix 42
AE6
B
372 377Right-handed 310
Helix 43
AE7
B
380 392Right-handed alpha
Helix 44
AE8
B
402 404Right-handed 310
Helix 45
AE9
B
406 413Right-handed alpha
Helix 46
AF1
B
420 426Right-handed alpha
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There are 6 sheets in PDB entry 7LR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
90 94parallel
Strand 3
A
52 55parallel
Strand 4
A
15 19parallel
Strand 5
A
298 303parallel
Strand 6
A
264 269parallel
Strand 7
A
221 225parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
358 362parallel
Strand 3
A
417 419parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
90 94parallel
Strand 3
B
52 55parallel
Strand 4
B
15 19parallel
Strand 5
B
298 303parallel
Strand 6
B
264 269parallel
Strand 7
B
221 225parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 400first strand
Strand 2
B
358 362parallel
Strand 3
B
417 419parallel
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