Analysis of interatomic Contacts of Structural Units in PDB entry:
7LRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LRD entry

There are 4 chains in PDB entry 7LRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ILE 560
B	LYS 669	GLU 1100
C	ASN 2	ILE 560
D	LYS 669	GLU 1100

There are 76 helices in PDB entry 7LRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	33	54	Right-handed alpha
Helix 3	AA3	A	69	74	Right-handed alpha
Helix 4	AA4	A	76	87	Right-handed alpha
Helix 5	AA5	A	89	93	Right-handed alpha
Helix 6	AA6	A	138	152	Right-handed alpha
Helix 7	AA7	A	173	186	Right-handed alpha
Helix 8	AA8	A	210	233	Right-handed alpha
Helix 9	AA9	A	253	271	Right-handed alpha
Helix 10	AB1	A	333	343	Right-handed alpha
Helix 11	AB2	A	392	403	Right-handed alpha
Helix 12	AB3	A	403	415	Right-handed alpha
Helix 13	AB4	A	427	432	Right-handed alpha
Helix 14	AB5	A	466	483	Right-handed alpha
Helix 15	AB6	A	519	524	Right-handed 310
Helix 16	AB7	A	526	541	Right-handed alpha
Helix 17	AB8	A	551	559	Right-handed alpha
Helix 18	AB9	B	679	683	Right-handed 310
Helix 19	AC1	B	684	691	Right-handed 310
Helix 20	AC2	B	695	704	Right-handed alpha
Helix 21	AC3	B	709	723	Right-handed alpha
Helix 22	AC4	B	723	728	Right-handed alpha
Helix 23	AC5	B	731	746	Right-handed alpha
Helix 24	AC6	B	753	770	Right-handed alpha
Helix 25	AC7	B	816	820	Right-handed 310
Helix 26	AC8	B	822	836	Right-handed alpha
Helix 27	AC9	B	844	851	Right-handed alpha
Helix 28	AD1	B	853	859	Right-handed alpha
Helix 29	AD2	B	863	880	Right-handed alpha
Helix 30	AD3	B	881	884	Right-handed 310
Helix 31	AD4	B	890	908	Right-handed alpha
Helix 32	AD5	B	912	926	Right-handed alpha
Helix 33	AD6	B	934	951	Right-handed alpha
Helix 34	AD7	B	952	956	Right-handed 310
Helix 35	AD8	B	957	983	Right-handed alpha
Helix 36	AD9	B	996	1008	Right-handed alpha
Helix 37	AE1	B	1008	1020	Right-handed alpha
Helix 38	AE2	B	1073	1100	Right-handed alpha
Helix 39	AE3	C	24	30	Right-handed alpha
Helix 40	AE4	C	33	54	Right-handed alpha
Helix 41	AE5	C	69	74	Right-handed alpha
Helix 42	AE6	C	76	87	Right-handed alpha
Helix 43	AE7	C	89	93	Right-handed alpha
Helix 44	AE8	C	138	152	Right-handed alpha
Helix 45	AE9	C	173	186	Right-handed alpha
Helix 46	AF1	C	210	233	Right-handed alpha
Helix 47	AF2	C	253	271	Right-handed alpha
Helix 48	AF3	C	333	343	Right-handed alpha
Helix 49	AF4	C	392	403	Right-handed alpha
Helix 50	AF5	C	403	415	Right-handed alpha
Helix 51	AF6	C	427	432	Right-handed alpha
Helix 52	AF7	C	466	483	Right-handed alpha
Helix 53	AF8	C	519	524	Right-handed 310
Helix 54	AF9	C	526	541	Right-handed alpha
Helix 55	AG1	C	551	559	Right-handed alpha
Helix 56	AG2	D	679	683	Right-handed 310
Helix 57	AG3	D	684	691	Right-handed 310
Helix 58	AG4	D	695	704	Right-handed alpha
Helix 59	AG5	D	709	723	Right-handed alpha
Helix 60	AG6	D	723	728	Right-handed alpha
Helix 61	AG7	D	731	746	Right-handed alpha
Helix 62	AG8	D	753	770	Right-handed alpha
Helix 63	AG9	D	816	820	Right-handed 310
Helix 64	AH1	D	822	836	Right-handed alpha
Helix 65	AH2	D	844	851	Right-handed alpha
Helix 66	AH3	D	853	859	Right-handed alpha
Helix 67	AH4	D	863	880	Right-handed alpha
Helix 68	AH5	D	881	884	Right-handed 310
Helix 69	AH6	D	890	908	Right-handed alpha
Helix 70	AH7	D	912	926	Right-handed alpha
Helix 71	AH8	D	934	951	Right-handed alpha
Helix 72	AH9	D	952	956	Right-handed 310
Helix 73	AI1	D	957	983	Right-handed alpha
Helix 74	AI2	D	996	1008	Right-handed alpha
Helix 75	AI3	D	1008	1020	Right-handed alpha
Helix 76	AI4	D	1073	1100	Right-handed alpha

There are 16 sheets in PDB entry 7LRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	14	21	anti-parallel
Strand 3	A	57	63	parallel
Strand 4	A	102	107	anti-parallel
Strand 5	A	94	99	anti-parallel
Strand 6	C	171	172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	133	136	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	102	107	anti-parallel
Strand 4	C	57	63	anti-parallel
Strand 5	C	14	21	parallel
Strand 6	C	4	5	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	285	294	parallel
Strand 3	A	297	307	anti-parallel
Strand 4	A	235	239	anti-parallel
Strand 5	A	204	207	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	313	314	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	328	331	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	420	425	parallel
Strand 3	A	440	448	anti-parallel
Strand 4	A	454	459	anti-parallel
Strand 5	A	494	500	parallel
Strand 6	A	506	511	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	773	first strand
Strand 2	B	814	815	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1027	first strand
Strand 2	B	1070	1072	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	133	136	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	285	294	parallel
Strand 3	C	297	307	anti-parallel
Strand 4	C	235	239	anti-parallel
Strand 5	C	204	207	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	313	314	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	325	first strand
Strand 2	C	328	331	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	420	425	parallel
Strand 3	C	440	448	anti-parallel
Strand 4	C	454	459	anti-parallel
Strand 5	C	494	500	parallel
Strand 6	C	506	511	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	772	773	first strand
Strand 2	D	814	815	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1025	1027	first strand
Strand 2	D	1070	1072	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LRD