Analysis of interatomic Contacts of Structural Units in PDB entry:
7LRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LRE entry

There are 2 chains in PDB entry 7LRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	PHE 550
B	ASN 2	PHE 550

There are 32 helices in PDB entry 7LRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	33	54	Right-handed alpha
Helix 3	AA3	A	69	74	Right-handed alpha
Helix 4	AA4	A	76	87	Right-handed alpha
Helix 5	AA5	A	89	93	Right-handed alpha
Helix 6	AA6	A	138	152	Right-handed alpha
Helix 7	AA7	A	173	186	Right-handed alpha
Helix 8	AA8	A	210	233	Right-handed alpha
Helix 9	AA9	A	253	271	Right-handed alpha
Helix 10	AB1	A	333	343	Right-handed alpha
Helix 11	AB2	A	392	403	Right-handed alpha
Helix 12	AB3	A	403	415	Right-handed alpha
Helix 13	AB4	A	427	432	Right-handed alpha
Helix 14	AB5	A	466	483	Right-handed alpha
Helix 15	AB6	A	519	524	Right-handed 310
Helix 16	AB7	A	526	541	Right-handed alpha
Helix 17	AB8	B	24	30	Right-handed alpha
Helix 18	AB9	B	33	54	Right-handed alpha
Helix 19	AC1	B	69	74	Right-handed alpha
Helix 20	AC2	B	76	87	Right-handed alpha
Helix 21	AC3	B	89	93	Right-handed alpha
Helix 22	AC4	B	138	152	Right-handed alpha
Helix 23	AC5	B	173	186	Right-handed alpha
Helix 24	AC6	B	210	233	Right-handed alpha
Helix 25	AC7	B	253	271	Right-handed alpha
Helix 26	AC8	B	333	343	Right-handed alpha
Helix 27	AC9	B	392	403	Right-handed alpha
Helix 28	AD1	B	403	415	Right-handed alpha
Helix 29	AD2	B	427	432	Right-handed alpha
Helix 30	AD3	B	466	483	Right-handed alpha
Helix 31	AD4	B	519	524	Right-handed 310
Helix 32	AD5	B	526	541	Right-handed alpha

There are 12 sheets in PDB entry 7LRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	14	21	anti-parallel
Strand 3	A	57	63	parallel
Strand 4	A	102	107	anti-parallel
Strand 5	A	94	99	anti-parallel
Strand 6	B	171	172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	133	136	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	B	94	99	anti-parallel
Strand 3	B	102	107	anti-parallel
Strand 4	B	57	63	anti-parallel
Strand 5	B	14	21	parallel
Strand 6	B	4	5	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	285	294	parallel
Strand 3	A	297	307	anti-parallel
Strand 4	A	235	239	anti-parallel
Strand 5	A	204	207	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	313	314	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	328	331	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	420	425	parallel
Strand 3	A	440	448	anti-parallel
Strand 4	A	454	459	anti-parallel
Strand 5	A	494	500	parallel
Strand 6	A	506	511	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	133	136	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	285	294	parallel
Strand 3	B	297	307	anti-parallel
Strand 4	B	235	239	anti-parallel
Strand 5	B	204	207	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	313	314	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	B	328	331	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	420	425	parallel
Strand 3	B	440	448	anti-parallel
Strand 4	B	454	459	anti-parallel
Strand 5	B	494	500	parallel
Strand 6	B	506	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LRE