Analysis of interatomic Contacts of Structural Units in PDB entry:
7LT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LT1 entry

There are 2 chains in PDB entry 7LT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ARG 430
B
 SER 28ARG 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7LT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 48Right-handed alpha
Helix 2
AA2
A
52 77Right-handed alpha
Helix 3
AA3
A
92 96Right-handed 310
Helix 4
AA4
A
128 130Right-handed 310
Helix 5
AA5
A
131 135Right-handed alpha
Helix 6
AA6
A
154 161Right-handed alpha
Helix 7
AA7
A
180 202Right-handed alpha
Helix 8
AA8
A
245 253Right-handed 310
Helix 9
AA9
A
263 268Right-handed alpha
Helix 10
AB1
A
291 299Right-handed alpha
Helix 11
AB2
A
303 321Right-handed alpha
Helix 12
AB3
A
328 342Right-handed alpha
Helix 13
AB4
A
344 350Right-handed alpha
Helix 14
AB5
A
353 371Right-handed alpha
Helix 15
AB6
A
389 406Right-handed alpha
Helix 16
AB7
A
406 430Right-handed alpha
Helix 17
AB8
B
30 48Right-handed alpha
Helix 18
AB9
B
52 78Right-handed alpha
Helix 19
AC1
B
92 96Right-handed 310
Helix 20
AC2
B
101 105Right-handed 310
Helix 21
AC3
B
154 161Right-handed alpha
Helix 22
AC4
B
180 202Right-handed alpha
Helix 23
AC5
B
248 254Right-handed alpha
Helix 24
AC6
B
263 269Right-handed alpha
Helix 25
AC7
B
291 300Right-handed alpha
Helix 26
AC8
B
303 321Right-handed alpha
Helix 27
AC9
B
328 343Right-handed alpha
Helix 28
AD1
B
353 372Right-handed alpha
Helix 29
AD2
B
389 406Right-handed alpha
Helix 30
AD3
B
406 431Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7LT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
116 127anti-parallel
Strand 3
A
229 242parallel
Strand 4
A
270 274anti-parallel
Strand 5
A
287 290anti-parallel
Strand 6
A
145 148anti-parallel
Strand 7
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
116 127anti-parallel
Strand 3
A
229 242parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
209 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
176 179anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
116 127anti-parallel
Strand 3
B
229 241parallel
Strand 4
B
272 274anti-parallel
Strand 5
B
286 290anti-parallel
Strand 6
B
145 148anti-parallel
Strand 7
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
116 127anti-parallel
Strand 3
B
229 241parallel
Strand 4
B
219 226anti-parallel
Strand 5
B
209 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
175 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il