Analysis of interatomic Contacts of Structural Units in PDB entry:
7LUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LUF entry

There are 6 chains in PDB entry 7LUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	HIS 1197
C	A -12	G 5
D	C -13	C 1
B	ASN 43	HIS 1197
E	A -12	G 5
F	C -13	C 1

There are 85 helices in PDB entry 7LUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	83	Right-handed 310
Helix 2	AA2	A	158	163	Right-handed alpha
Helix 3	AA3	A	168	175	Right-handed alpha
Helix 4	AA4	A	209	216	Right-handed alpha
Helix 5	AA5	A	220	234	Right-handed alpha
Helix 6	AA6	A	244	248	Right-handed 310
Helix 7	AA7	A	275	286	Right-handed alpha
Helix 8	AA8	A	298	307	Right-handed alpha
Helix 9	AA9	A	331	335	Right-handed 310
Helix 10	AB1	A	420	430	Right-handed alpha
Helix 11	AB2	A	442	458	Right-handed alpha
Helix 12	AB3	A	470	482	Right-handed alpha
Helix 13	AB4	A	525	533	Right-handed alpha
Helix 14	AB5	A	539	548	Right-handed alpha
Helix 15	AB6	A	556	558	Right-handed 310
Helix 16	AB7	A	559	566	Right-handed alpha
Helix 17	AB8	A	567	593	Right-handed alpha
Helix 18	AB9	A	593	606	Right-handed alpha
Helix 19	AC1	A	608	615	Right-handed alpha
Helix 20	AC2	A	617	633	Right-handed alpha
Helix 21	AC3	A	720	729	Right-handed alpha
Helix 22	AC4	A	739	744	Right-handed alpha
Helix 23	AC5	A	772	790	Right-handed alpha
Helix 24	AC6	A	796	822	Right-handed alpha
Helix 25	AC7	A	830	856	Right-handed alpha
Helix 26	AC8	A	858	866	Right-handed alpha
Helix 27	AC9	A	869	873	Right-handed 310
Helix 28	AD1	A	901	918	Right-handed alpha
Helix 29	AD2	A	963	980	Right-handed alpha
Helix 30	AD3	A	980	993	Right-handed alpha
Helix 31	AD4	A	996	1000	Right-handed 310
Helix 32	AD5	A	1004	1006	Right-handed 310
Helix 33	AD6	A	1007	1023	Right-handed alpha
Helix 34	AD7	A	1028	1032	Right-handed 310
Helix 35	AD8	A	1049	1061	Right-handed alpha
Helix 36	AD9	A	1080	1095	Right-handed alpha
Helix 37	AE1	A	1145	1152	Right-handed alpha
Helix 38	AE2	A	1157	1174	Right-handed alpha
Helix 39	AE3	A	1175	1178	Right-handed 310
Helix 40	AE4	A	1180	1189	Right-handed alpha
Helix 41	AE5	A	1190	1192	Right-handed 310
Helix 42	AE6	A	1193	1197	Right-handed 310
Helix 43	AE7	B	81	83	Right-handed 310
Helix 44	AE8	B	158	163	Right-handed alpha
Helix 45	AE9	B	168	175	Right-handed alpha
Helix 46	AF1	B	209	216	Right-handed alpha
Helix 47	AF2	B	220	234	Right-handed alpha
Helix 48	AF3	B	244	246	Right-handed 310
Helix 49	AF4	B	275	286	Right-handed alpha
Helix 50	AF5	B	298	307	Right-handed alpha
Helix 51	AF6	B	331	335	Right-handed 310
Helix 52	AF7	B	420	430	Right-handed alpha
Helix 53	AF8	B	442	458	Right-handed alpha
Helix 54	AF9	B	470	482	Right-handed alpha
Helix 55	AG1	B	525	533	Right-handed alpha
Helix 56	AG2	B	539	548	Right-handed alpha
Helix 57	AG3	B	556	558	Right-handed 310
Helix 58	AG4	B	559	566	Right-handed alpha
Helix 59	AG5	B	567	593	Right-handed alpha
Helix 60	AG6	B	593	606	Right-handed alpha
Helix 61	AG7	B	608	615	Right-handed alpha
Helix 62	AG8	B	617	633	Right-handed alpha
Helix 63	AG9	B	720	729	Right-handed alpha
Helix 64	AH1	B	739	744	Right-handed alpha
Helix 65	AH2	B	772	791	Right-handed alpha
Helix 66	AH3	B	796	822	Right-handed alpha
Helix 67	AH4	B	830	856	Right-handed alpha
Helix 68	AH5	B	858	866	Right-handed alpha
Helix 69	AH6	B	869	873	Right-handed 310
Helix 70	AH7	B	901	918	Right-handed alpha
Helix 71	AH8	B	963	980	Right-handed alpha
Helix 72	AH9	B	980	993	Right-handed alpha
Helix 73	AI1	B	994	1000	Right-handed alpha
Helix 74	AI2	B	1004	1006	Right-handed 310
Helix 75	AI3	B	1007	1023	Right-handed alpha
Helix 76	AI4	B	1028	1032	Right-handed 310
Helix 77	AI5	B	1040	1044	Right-handed 310
Helix 78	AI6	B	1049	1061	Right-handed alpha
Helix 79	AI7	B	1080	1095	Right-handed alpha
Helix 80	AI8	B	1145	1152	Right-handed alpha
Helix 81	AI9	B	1157	1174	Right-handed alpha
Helix 82	AJ1	B	1175	1178	Right-handed 310
Helix 83	AJ2	B	1180	1190	Right-handed alpha
Helix 84	AJ3	B	1191	1192	Right-handed 310
Helix 85	AJ4	B	1193	1197	Right-handed 310

There are 20 sheets in PDB entry 7LUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	94	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	193	199	parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	314	318	anti-parallel
Strand 7	A	350	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	266	273	anti-parallel
Strand 4	A	249	257	anti-parallel
Strand 5	A	634	635	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	405	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	889	893	anti-parallel
Strand 5	A	881	884	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	760	765	anti-parallel
Strand 3	A	752	757	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1071	1074	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	79	first strand
Strand 2	B	94	99	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	110	113	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	193	199	parallel
Strand 4	B	179	187	anti-parallel
Strand 5	B	146	157	anti-parallel
Strand 6	B	314	318	anti-parallel
Strand 7	B	350	352	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	266	273	anti-parallel
Strand 4	B	248	257	anti-parallel
Strand 5	B	634	635	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	405	414	parallel
Strand 3	B	390	400	anti-parallel
Strand 4	B	363	372	anti-parallel
Strand 5	B	461	464	parallel
Strand 6	B	521	524	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	516	517	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	709	first strand
Strand 2	B	924	937	anti-parallel
Strand 3	B	713	718	anti-parallel
Strand 4	B	889	893	anti-parallel
Strand 5	B	881	886	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	709	first strand
Strand 2	B	924	937	anti-parallel
Strand 3	B	940	945	anti-parallel
Strand 4	B	950	953	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	761	765	anti-parallel
Strand 3	B	752	756	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1033	1036	first strand
Strand 2	B	1071	1074	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LUF