Analysis of interatomic Contacts of Structural Units in PDB entry:
7LWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LWD entry

There are 3 chains in PDB entry 7LWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 77PRO 617
H
 GLN 20THR 137
L
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7LWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
99 112Right-handed alpha
Helix 3
AA3
A
117 129Right-handed alpha
Helix 4
AA4
A
129 144Right-handed alpha
Helix 5
AA5
A
150 155Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
159 189Right-handed alpha
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
238 242Right-handed 310
Helix 10
AB1
A
252 270Right-handed alpha
Helix 11
AB2
A
280 285Right-handed alpha
Helix 12
AB3
A
286 302Right-handed alpha
Helix 13
AB4
A
305 313Right-handed alpha
Helix 14
AB5
A
316 321Right-handed alpha
Helix 15
AB6
A
322 338Right-handed alpha
Helix 16
AB7
A
343 349Right-handed alpha
Helix 17
AB8
A
360 390Right-handed alpha
Helix 18
AB9
A
401 408Right-handed alpha
Helix 19
AC1
A
408 417Right-handed alpha
Helix 20
AC2
A
424 454Right-handed alpha
Helix 21
AC3
A
465 477Right-handed alpha
Helix 22
AC4
A
485 494Right-handed alpha
Helix 23
AC5
A
498 514Right-handed alpha
Helix 24
AC6
A
517 530Right-handed alpha
Helix 25
AC7
A
534 544Right-handed alpha
Helix 26
AC8
A
544 557Right-handed alpha
Helix 27
AC9
A
572 585Right-handed alpha
Helix 28
AD1
A
587 600Right-handed alpha
Helix 29
AD2
A
603 611Right-handed alpha
Helix 30
AD3
H
47 51Right-handed 310
Helix 31
AD4
H
82 86Right-handed alpha
Helix 32
AD5
H
106 110Right-handed 310
Helix 33
AD6
H
120 124Right-handed 310
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There are 7 sheets in PDB entry 7LWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 30first strand
Strand 2
H
136 137parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 42first strand
Strand 2
H
97 102anti-parallel
Strand 3
H
87 92anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
78 79first strand
Strand 2
H
66 69anti-parallel
Strand 3
H
55 58anti-parallel
Strand 4
H
112 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
24 27first strand
Strand 2
L
42 45anti-parallel
Strand 3
L
94 96anti-parallel
Strand 4
L
89 91anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
127 128parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
50 51first strand
Strand 2
L
54 55anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
77 78first strand
Strand 2
L
69 73anti-parallel
Strand 3
L
57 61anti-parallel
Strand 4
L
112 114anti-parallel
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