Analysis of interatomic Contacts of Structural Units in PDB entry:
7LXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LXD entry

There are 5 chains in PDB entry 7LXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 21	ASP 1488
D	ASN 2	LEU 219
E	ASN 2	LEU 219
F	HIS 0	ASP 486
G	MET 1	SER 118

There are 70 helices in PDB entry 7LXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	96	Right-handed alpha
Helix 2	AA2	A	97	114	Right-handed alpha
Helix 3	AA3	A	168	179	Right-handed alpha
Helix 4	AA4	A	189	193	Right-handed 310
Helix 5	AA5	A	194	203	Right-handed alpha
Helix 6	AA6	A	228	233	Right-handed alpha
Helix 7	AA7	A	235	242	Right-handed alpha
Helix 8	AA8	A	284	288	Right-handed 310
Helix 9	AA9	A	345	360	Right-handed alpha
Helix 10	AB1	A	369	378	Right-handed alpha
Helix 11	AB2	A	385	390	Right-handed alpha
Helix 12	AB3	A	532	541	Right-handed alpha
Helix 13	AB4	A	557	561	Right-handed 310
Helix 14	AB5	A	612	623	Right-handed alpha
Helix 15	AB6	A	721	724	Right-handed 310
Helix 16	AB7	A	725	734	Right-handed alpha
Helix 17	AB8	A	745	759	Right-handed alpha
Helix 18	AB9	A	773	784	Right-handed alpha
Helix 19	AC1	A	789	794	Right-handed alpha
Helix 20	AC2	A	836	840	Right-handed 310
Helix 21	AC3	A	843	848	Right-handed alpha
Helix 22	AC4	A	857	864	Right-handed alpha
Helix 23	AC5	A	870	895	Right-handed alpha
Helix 24	AC6	A	901	909	Right-handed alpha
Helix 25	AC7	A	911	918	Right-handed alpha
Helix 26	AC8	A	922	935	Right-handed alpha
Helix 27	AC9	A	943	948	Right-handed alpha
Helix 28	AD1	A	979	988	Right-handed alpha
Helix 29	AD2	A	990	994	Right-handed 310
Helix 30	AD3	A	1018	1023	Right-handed alpha
Helix 31	AD4	A	1038	1043	Right-handed alpha
Helix 32	AD5	A	1044	1067	Right-handed alpha
Helix 33	AD6	A	1074	1090	Right-handed alpha
Helix 34	AD7	A	1106	1130	Right-handed alpha
Helix 35	AD8	A	1157	1173	Right-handed alpha
Helix 36	AD9	A	1224	1241	Right-handed alpha
Helix 37	AE1	A	1244	1260	Right-handed alpha
Helix 38	AE2	A	1335	1339	Right-handed 310
Helix 39	AE3	A	1344	1358	Right-handed alpha
Helix 40	AE4	A	1358	1363	Right-handed alpha
Helix 41	AE5	A	1365	1376	Right-handed alpha
Helix 42	AE6	A	1424	1450	Right-handed alpha
Helix 43	AE7	A	1451	1453	Right-handed 310
Helix 44	AE8	A	1460	1467	Right-handed alpha
Helix 45	AE9	A	1475	1486	Right-handed alpha
Helix 46	AF1	D	5	24	Right-handed alpha
Helix 47	AF2	D	51	68	Right-handed alpha
Helix 48	AF3	D	69	72	Right-handed 310
Helix 49	AF4	D	110	129	Right-handed alpha
Helix 50	AF5	E	3	24	Right-handed alpha
Helix 51	AF6	E	51	66	Right-handed alpha
Helix 52	AF7	E	98	103	Right-handed alpha
Helix 53	AF8	E	109	130	Right-handed alpha
Helix 54	AF9	E	152	157	Right-handed 310
Helix 55	AG1	E	164	176	Right-handed alpha
Helix 56	AG2	F	1	9	Right-handed alpha
Helix 57	AG3	F	52	70	Right-handed alpha
Helix 58	AG4	F	92	97	Right-handed alpha
Helix 59	AG5	F	129	143	Right-handed alpha
Helix 60	AG6	F	160	165	Right-handed alpha
Helix 61	AG7	F	226	231	Right-handed alpha
Helix 62	AG8	F	248	254	Right-handed alpha
Helix 63	AG9	F	267	271	Right-handed 310
Helix 64	AH1	F	272	291	Right-handed alpha
Helix 65	AH2	F	321	331	Right-handed alpha
Helix 66	AH3	F	357	365	Right-handed alpha
Helix 67	AH4	F	392	406	Right-handed alpha
Helix 68	AH5	G	3	15	Right-handed alpha
Helix 69	AH6	G	22	30	Right-handed alpha
Helix 70	AH7	G	32	46	Right-handed alpha

There are 22 sheets in PDB entry 7LXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	68	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	161	162	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	158	159	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	937	938	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	D	37	38	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	92	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	140	147	anti-parallel
Strand 4	A	602	606	anti-parallel
Strand 5	E	177	179	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	670	first strand
Strand 2	A	763	764	parallel
Strand 3	A	822	823	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	696	first strand
Strand 2	A	713	715	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	973	first strand
Strand 2	A	1146	1149	anti-parallel
Strand 3	A	1137	1141	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1027	1029	first strand
Strand 2	A	1035	1037	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1199	1200	first strand
Strand 2	A	1210	1211	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	140	145	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	215	216	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	41	49	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	206	first strand
Strand 2	E	211	212	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	175	first strand
Strand 2	F	104	108	anti-parallel
Strand 3	F	146	149	anti-parallel
Strand 4	F	156	157	anti-parallel
Strand 5	F	184	185	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	258	first strand
Strand 2	F	296	297	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	346	first strand
Strand 2	F	351	354	anti-parallel
Strand 3	F	435	441	parallel
Strand 4	F	455	462	parallel
Strand 5	F	448	450	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	470	472	first strand
Strand 2	F	481	483	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	83	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LXD