Analysis of interatomic Contacts of Structural Units in PDB entry:
7LXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LXR entry

There are 2 chains in PDB entry 7LXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18THR 367
B
 GLN 18ALA 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7LXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
108 114Right-handed alpha
Helix 5
AA5
A
132 148Right-handed alpha
Helix 6
AA6
A
202 217Right-handed alpha
Helix 7
AA7
A
276 302Right-handed alpha
Helix 8
AA8
A
307 310Right-handed 310
Helix 9
AA9
A
311 318Right-handed alpha
Helix 10
AB1
A
319 321Right-handed 310
Helix 11
AB2
A
336 338Right-handed 310
Helix 12
AB3
A
339 354Right-handed alpha
Helix 13
AB4
B
30 36Right-handed alpha
Helix 14
AB5
B
75 84Right-handed alpha
Helix 15
AB6
B
86 93Right-handed alpha
Helix 16
AB7
B
108 114Right-handed alpha
Helix 17
AB8
B
132 149Right-handed alpha
Helix 18
AB9
B
202 217Right-handed alpha
Helix 19
AC1
B
276 302Right-handed alpha
Helix 20
AC2
B
307 310Right-handed 310
Helix 21
AC3
B
311 318Right-handed alpha
Helix 22
AC4
B
319 321Right-handed 310
Helix 23
AC5
B
336 338Right-handed 310
Helix 24
AC6
B
339 354Right-handed alpha
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There are 10 sheets in PDB entry 7LXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
21 26parallel
Strand 3
A
326 333parallel
Strand 4
A
96 103parallel
Strand 5
A
252 261parallel
Strand 6
A
232 243anti-parallel
Strand 7
A
150 162anti-parallel
Strand 8
A
165 168anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
21 26parallel
Strand 3
A
326 333parallel
Strand 4
A
96 103parallel
Strand 5
A
252 261parallel
Strand 6
A
232 243anti-parallel
Strand 7
A
150 162anti-parallel
Strand 8
A
198 200anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
60 65anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
190 193anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
225 229anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
21 26parallel
Strand 3
B
326 333parallel
Strand 4
B
96 103parallel
Strand 5
B
251 261parallel
Strand 6
B
232 243anti-parallel
Strand 7
B
151 162anti-parallel
Strand 8
B
198 200anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
151 162anti-parallel
Strand 3
B
232 243anti-parallel
Strand 4
B
251 261anti-parallel
Strand 5
B
364 366anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
62 65anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
191 193anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
225 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il