Analysis of interatomic Contacts of Structural Units in PDB entry:
7LY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LY5 entry

There are 2 chains in PDB entry 7LY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 129ILE 323
A
 ALA 1297LEU 1571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7LY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
158 166Right-handed alpha
Helix 2
AA2
B
228 232Right-handed 310
Helix 3
AA3
B
233 235Right-handed 310
Helix 4
AA4
B
236 243Right-handed alpha
Helix 5
AA5
B
263 283Right-handed alpha
Helix 6
AA6
B
297 305Right-handed alpha
Helix 7
AA7
A
1299 1311Right-handed alpha
Helix 8
AA8
A
1326 1342Right-handed alpha
Helix 9
AA9
A
1358 1371Right-handed alpha
Helix 10
AB1
A
1383 1394Right-handed alpha
Helix 11
AB2
A
1403 1408Right-handed alpha
Helix 12
AB3
A
1409 1413Right-handed 310
Helix 13
AB4
A
1447 1461Right-handed alpha
Helix 14
AB5
A
1479 1490Right-handed alpha
Helix 15
AB6
A
1502 1513Right-handed alpha
Helix 16
AB7
A
1521 1529Right-handed alpha
Helix 17
AB8
A
1554 1563Right-handed alpha
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There are 5 sheets in PDB entry 7LY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 222first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
245 252anti-parallel
Strand 5
B
311 321anti-parallel
Strand 6
B
288 293anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1323 1325first strand
Strand 2
A
1315 1318anti-parallel
Strand 3
A
1493 1496parallel
Strand 4
A
1468 1471parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1374 1378first strand
Strand 2
A
1350 1354parallel
Strand 3
A
1399 1400parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1427 1433first strand
Strand 2
A
1441 1446anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1517 1520first strand
Strand 2
A
1543 1546parallel
Strand 3
A
1567 1570parallel
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