Analysis of interatomic Contacts of Structural Units in PDB entry:
7LY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LY9 entry

There are 16 chains in PDB entry 7LY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	TYR 2	THR 105
H	GLU 1	ASP 100
H	ASP 100	ASP 100
H	ASN 100	SER 112
G	GLY 33	THR 504
B	GLN 1	VAL 111
C	ASP 1	LEU 106
F	GLY 514	GLU 657
D	GLY 33	THR 504
E	GLN 1	VAL 111
I	ASP 1	LEU 106
J	GLY 514	ASN 660
K	GLY 33	ARG 503
A	GLN 1	VAL 111
M	ASP 1	LEU 104
N	GLY 516	ASN 660

There are 39 helices in PDB entry 7LY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	27	31	Right-handed 310
Helix 2	AA2	L	79	83	Right-handed 310
Helix 3	AA3	H	60	64	Right-handed 310
Helix 4	AA4	G	94	98	Right-handed 310
Helix 5	AA5	G	99	116	Right-handed alpha
Helix 6	AA6	G	335	356	Right-handed alpha
Helix 7	AA7	G	368	373	Right-handed alpha
Helix 8	AA8	G	388	392	Right-handed 310
Helix 9	AA9	G	476	481	Right-handed alpha
Helix 10	AB1	B	28	32	Right-handed 310
Helix 11	AB2	F	516	524	Right-handed alpha
Helix 12	AB3	F	529	536	Right-handed alpha
Helix 13	AB4	F	569	596	Right-handed alpha
Helix 14	AB5	F	618	626	Right-handed alpha
Helix 15	AB6	F	627	637	Right-handed alpha
Helix 16	AB7	F	638	657	Right-handed alpha
Helix 17	AB8	D	70	74	Right-handed 310
Helix 18	AB9	D	98	117	Right-handed alpha
Helix 19	AC1	D	335	356	Right-handed alpha
Helix 20	AC2	D	475	481	Right-handed alpha
Helix 21	AC3	E	83	87	Right-handed 310
Helix 22	AC4	J	515	523	Right-handed alpha
Helix 23	AC5	J	529	536	Right-handed alpha
Helix 24	AC6	J	569	595	Right-handed alpha
Helix 25	AC7	J	618	626	Right-handed alpha
Helix 26	AC8	J	627	636	Right-handed alpha
Helix 27	AC9	J	638	660	Right-handed alpha
Helix 28	AD1	K	99	117	Right-handed alpha
Helix 29	AD2	K	335	356	Right-handed alpha
Helix 30	AD3	K	368	373	Right-handed alpha
Helix 31	AD4	K	388	392	Right-handed 310
Helix 32	AD5	K	475	481	Right-handed alpha
Helix 33	AD6	A	28	32	Right-handed 310
Helix 34	AD7	A	83	87	Right-handed 310
Helix 35	AD8	N	517	523	Right-handed alpha
Helix 36	AD9	N	529	536	Right-handed alpha
Helix 37	AE1	N	569	596	Right-handed alpha
Helix 38	AE2	N	627	636	Right-handed alpha
Helix 39	AE3	N	638	659	Right-handed alpha

There are 58 sheets in PDB entry 7LY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	103	104	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	24	first strand
Strand 2	L	70	74	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	46	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	77	80	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	18	first strand
Strand 2	H	82	82	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	100	100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	494	499	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	131	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	444	456	anti-parallel
Strand 3	G	292	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	444	456	anti-parallel
Strand 4	G	468	470	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	312	first strand
Strand 2	G	315	320	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	334	first strand
Strand 2	G	413	415	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel
Strand 3	G	418	420	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	76	82	anti-parallel
Strand 4	B	68	71	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	107	109	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	23	25	anti-parallel
Strand 3	C	70	71	anti-parallel
Strand 4	C	66	67	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	34	38	anti-parallel
Strand 4	C	85	89	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	498	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	J	603	605	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	488	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	75	76	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	236	239	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	170	177	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	191	193	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	395	first strand
Strand 2	D	359	361	anti-parallel
Strand 3	D	466	470	parallel
Strand 4	D	448	456	anti-parallel
Strand 5	D	292	297	anti-parallel
Strand 6	D	330	334	anti-parallel
Strand 7	D	413	420	anti-parallel
Strand 8	D	381	385	anti-parallel
Strand 9	D	374	378	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	448	456	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	284	287	anti-parallel
Strand 3	D	448	456	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	445	first strand
Strand 2	D	292	297	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	312	first strand
Strand 2	D	315	319	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	107	110	parallel
Strand 3	E	88	92	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	57	58	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	24	first strand
Strand 2	E	76	82	anti-parallel
Strand 3	E	67	71	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	24	25	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	22	first strand
Strand 2	I	70	76	anti-parallel
Strand 3	I	62	67	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	34	37	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	97	98	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	34	37	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	102	103	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	36	first strand
Strand 2	K	498	499	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	40	first strand
Strand 2	K	494	495	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	47	first strand
Strand 2	K	488	491	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	84	85	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	75	76	first strand
Strand 2	K	53	56	parallel
Strand 3	K	216	218	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	236	239	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	131	first strand
Strand 2	K	154	161	anti-parallel
Strand 3	K	170	177	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	181	183	first strand
Strand 2	K	191	193	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	203	first strand
Strand 2	K	432	435	parallel
Strand 3	K	423	424	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	444	455	anti-parallel
Strand 3	K	292	297	anti-parallel

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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	271	273	first strand
Strand 2	K	284	287	anti-parallel
Strand 3	K	444	455	anti-parallel
Strand 4	K	467	470	anti-parallel
Strand 5	K	360	361	parallel
Strand 6	K	394	395	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	308	first strand
Strand 2	K	316	320	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	332	334	first strand
Strand 2	K	413	415	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	377	378	first strand
Strand 2	K	381	385	anti-parallel
Strand 3	K	418	421	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	76	82	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 6 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	107	110	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	57	58	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	107	110	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	63	67	anti-parallel

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There are 5 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	45	49	anti-parallel
Strand 3	M	34	38	anti-parallel
Strand 4	M	85	89	anti-parallel
Strand 5	M	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LY9