Analysis of interatomic Contacts of Structural Units in PDB entry:
7LYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LYC entry

There are 8 chains in PDB entry 7LYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 37ALA 135
B
ALA 15GLY 102
D
ARG 29SER 123
E
LYS 37ALA 135
F
LYS 20GLY 102
H
ARG 31SER 123
I
A -73 T 73
J
T -72 C 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 7LYC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
B
25 29Right-handed 310
Helix 6
AA6
B
30 41Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 92Right-handed alpha
Helix 9
AA9
D
37 49Right-handed alpha
Helix 10
AB1
D
55 84Right-handed alpha
Helix 11
AB2
D
90 102Right-handed alpha
Helix 12
AB3
D
103 123Right-handed alpha
Helix 13
AB4
E
44 57Right-handed alpha
Helix 14
AB5
E
63 79Right-handed alpha
Helix 15
AB6
E
85 114Right-handed alpha
Helix 16
AB7
E
120 131Right-handed alpha
Helix 17
AB8
F
25 29Right-handed 310
Helix 18
AB9
F
30 41Right-handed alpha
Helix 19
AC1
F
49 76Right-handed alpha
Helix 20
AC2
F
82 92Right-handed alpha
Helix 21
AC3
H
37 49Right-handed alpha
Helix 22
AC4
H
55 84Right-handed alpha
Helix 23
AC5
H
90 102Right-handed alpha
Helix 24
AC6
H
103 123Right-handed alpha
Helix 25
AC7
K
22 35Right-handed alpha
Helix 26
AC8
K
37 39Right-handed 310
Helix 27
AC9
K
56 60Right-handed 310
Helix 28
AD1
N
430 439Right-handed alpha
Helix 29
AD2
N
440 450Right-handed alpha
Helix 30
AD3
N
463 472Right-handed alpha
Helix 31
AD4
N
473 483Right-handed alpha
Helix 32
AD5
N
491 495Right-handed 310
Helix 33
AD6
N
496 505Right-handed alpha
Helix 34
AD7
N
506 516Right-handed alpha
Helix 35
AD8
N
529 534Right-handed 310
Helix 36
AD9
N
536 544Right-handed alpha
Helix 37
AE1
N
578 593Right-handed alpha
Helix 38
AE2
N
617 626Right-handed alpha
Helix 39
AE3
N
633 643Right-handed alpha
Helix 40
AE4
N
648 652Right-handed 310
Helix 41
AE5
N
656 666Right-handed alpha
Helix 42
AE6
N
687 698Right-handed alpha
Helix 43
AE7
N
711 716Right-handed alpha
Helix 44
AE8
N
760 770Right-handed alpha
Helix 45
AE9
C
16 22Right-handed alpha
Helix 46
AF1
C
26 37Right-handed alpha
Helix 47
AF2
C
46 73Right-handed alpha
Helix 48
AF3
C
79 90Right-handed alpha
Helix 49
AF4
C
92 97Right-handed alpha
Helix 50
AF5
G
16 22Right-handed alpha
Helix 51
AF6
G
26 36Right-handed alpha
Helix 52
AF7
G
46 73Right-handed alpha
Helix 53
AF8
G
79 90Right-handed alpha
Helix 54
AF9
G
92 97Right-handed alpha
Helix 55
AG1
G
112 116Right-handed 310
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There are 13 sheets in PDB entry 7LYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 54first strand
Strand 2
C
77 78parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
88 89first strand
Strand 2
C
42 43parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
96 98first strand
Strand 2
C
100 102parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
53 54first strand
Strand 2
G
77 78parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
88 89first strand
Strand 2
G
42 43parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 17first strand
Strand 2
K
1 7anti-parallel
Strand 3
K
66 71parallel
Strand 4
K
41 45anti-parallel
Strand 5
K
48 49anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
595 597first strand
Strand 2
N
571 574parallel
Strand 3
N
606 609parallel
Strand 4
N
629 632parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
701 702first strand
Strand 2
N
676 679parallel
Strand 3
N
735 739parallel
Strand 4
N
755 759parallel
Strand 5
N
751 752anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il