Analysis of interatomic Contacts of Structural Units in PDB entry:
7LYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LYS entry

There are 2 chains in PDB entry 7LYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6THR 712
B
 A -22 G -16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7LYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
40 48Right-handed alpha
Helix 4
AA4
A
72 75Right-handed 310
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
93 99Right-handed alpha
Helix 7
AA7
A
105 117Right-handed alpha
Helix 8
AA8
A
125 169Right-handed alpha
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
252 256Right-handed 310
Helix 11
AB2
A
289 296Right-handed alpha
Helix 12
AB3
A
313 323Right-handed alpha
Helix 13
AB4
A
331 338Right-handed alpha
Helix 14
AB5
A
373 384Right-handed alpha
Helix 15
AB6
A
426 453Right-handed alpha
Helix 16
AB7
A
456 483Right-handed alpha
Helix 17
AB8
A
499 509Right-handed alpha
Helix 18
AB9
A
536 545Right-handed alpha
Helix 19
AC1
A
549 566Right-handed alpha
Helix 20
AC2
A
568 597Right-handed alpha
Helix 21
AC3
A
609 613Right-handed 310
Helix 22
AC4
A
636 651Right-handed alpha
Helix 23
AC5
A
698 708Right-handed alpha
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There are 5 sheets in PDB entry 7LYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
351 355anti-parallel
Strand 4
A
61 69anti-parallel
Strand 5
A
308 312anti-parallel
Strand 6
A
299 303anti-parallel
Strand 7
A
207 208anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
269 272anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
656 658parallel
Strand 3
A
601 606parallel
Strand 4
A
388 395parallel
Strand 5
A
401 408anti-parallel
Strand 6
A
418 424anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
414 415anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
533 534anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il