Analysis of interatomic Contacts of Structural Units in PDB entry:
7LYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LYX entry

There is 1 chain in PDB entry 7LYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26HIS 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7LYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 52Right-handed alpha
Helix 2
AA2
A
52 65Right-handed alpha
Helix 3
AA3
A
82 84Right-handed 310
Helix 4
AA4
A
85 91Right-handed alpha
Helix 5
AA5
A
99 112Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
132 154Right-handed alpha
Helix 8
AA8
A
169 187Right-handed alpha
Helix 9
AA9
A
191 218Right-handed alpha
Helix 10
AB1
A
222 240Right-handed alpha
Helix 11
AB2
A
252 265Right-handed alpha
Helix 12
AB3
A
268 285Right-handed alpha
Helix 13
AB4
A
286 300Right-handed alpha
Helix 14
AB5
A
301 314Right-handed alpha
Helix 15
AB6
A
333 336Right-handed 310
Helix 16
AB7
A
337 351Right-handed alpha
Helix 17
AB8
A
385 390Right-handed alpha
Helix 18
AB9
A
435 439Right-handed 310
Helix 19
AC1
A
442 460Right-handed alpha
Helix 20
AC2
A
476 480Right-handed 310
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There are 5 sheets in PDB entry 7LYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
381 384parallel
Strand 4
A
356 360anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
492 497anti-parallel
Strand 3
A
461 465anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
482 484anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 367first strand
Strand 2
A
373 376anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
424 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il