Analysis of interatomic Contacts of Structural Units in PDB entry:
7LZ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LZ6 entry

There are 6 chains in PDB entry 7LZ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 88	ASP 584
B	ASN 88	ASP 584
C	GLU 1	LYS 228
D	GLN 1	SER 217
E	GLU 1	LYS 228
F	GLN 1	SER 217

There are 67 helices in PDB entry 7LZ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	92	Right-handed 310
Helix 2	AA2	A	93	97	Right-handed 310
Helix 3	AA3	A	103	127	Right-handed alpha
Helix 4	AA4	A	137	144	Right-handed alpha
Helix 5	AA5	A	155	170	Right-handed alpha
Helix 6	AA6	A	187	201	Right-handed alpha
Helix 7	AA7	A	206	209	Right-handed 310
Helix 8	AA8	A	210	229	Right-handed alpha
Helix 9	AA9	A	230	234	Right-handed 310
Helix 10	AB1	A	242	259	Right-handed alpha
Helix 11	AB2	A	261	266	Right-handed alpha
Helix 12	AB3	A	267	270	Right-handed 310
Helix 13	AB4	A	283	292	Right-handed alpha
Helix 14	AB5	A	295	297	Right-handed 310
Helix 15	AB6	A	311	325	Right-handed alpha
Helix 16	AB7	A	346	357	Right-handed alpha
Helix 17	AB8	A	368	374	Right-handed 310
Helix 18	AB9	A	377	382	Right-handed 310
Helix 19	AC1	A	383	387	Right-handed 310
Helix 20	AC2	A	393	398	Right-handed alpha
Helix 21	AC3	A	413	420	Right-handed alpha
Helix 22	AC4	A	434	438	Right-handed 310
Helix 23	AC5	A	451	487	Right-handed alpha
Helix 24	AC6	A	510	514	Right-handed 310
Helix 25	AC7	A	522	540	Right-handed alpha
Helix 26	AC8	A	567	583	Right-handed alpha
Helix 27	AC9	B	93	97	Right-handed 310
Helix 28	AD1	B	103	126	Right-handed alpha
Helix 29	AD2	B	137	145	Right-handed alpha
Helix 30	AD3	B	155	170	Right-handed alpha
Helix 31	AD4	B	187	201	Right-handed alpha
Helix 32	AD5	B	210	229	Right-handed alpha
Helix 33	AD6	B	230	234	Right-handed 310
Helix 34	AD7	B	242	259	Right-handed alpha
Helix 35	AD8	B	261	266	Right-handed alpha
Helix 36	AD9	B	267	270	Right-handed 310
Helix 37	AE1	B	282	292	Right-handed alpha
Helix 38	AE2	B	295	297	Right-handed 310
Helix 39	AE3	B	311	325	Right-handed alpha
Helix 40	AE4	B	346	357	Right-handed alpha
Helix 41	AE5	B	368	374	Right-handed 310
Helix 42	AE6	B	377	382	Right-handed 310
Helix 43	AE7	B	383	387	Right-handed 310
Helix 44	AE8	B	393	398	Right-handed alpha
Helix 45	AE9	B	413	420	Right-handed alpha
Helix 46	AF1	B	451	488	Right-handed alpha
Helix 47	AF2	B	510	514	Right-handed 310
Helix 48	AF3	B	522	541	Right-handed alpha
Helix 49	AF4	B	567	582	Right-handed alpha
Helix 50	AF5	C	28	32	Right-handed 310
Helix 51	AF6	C	64	67	Right-handed 310
Helix 52	AF7	C	76	78	Right-handed 310
Helix 53	AF8	C	89	93	Right-handed 310
Helix 54	AF9	C	201	203	Right-handed 310
Helix 55	AG1	D	81	85	Right-handed 310
Helix 56	AG2	D	126	133	Right-handed alpha
Helix 57	AG3	D	186	191	Right-handed alpha
Helix 58	AG4	E	28	32	Right-handed 310
Helix 59	AG5	E	64	67	Right-handed 310
Helix 60	AG6	E	76	78	Right-handed 310
Helix 61	AG7	E	89	93	Right-handed 310
Helix 62	AG8	E	170	172	Right-handed 310
Helix 63	AG9	F	81	85	Right-handed 310
Helix 64	AH1	F	94	99	Right-handed alpha
Helix 65	AH2	F	126	133	Right-handed alpha
Helix 66	AH3	F	172	177	Right-handed alpha
Helix 67	AH4	F	186	191	Right-handed alpha

There are 24 sheets in PDB entry 7LZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	405	409	anti-parallel
Strand 3	A	389	392	anti-parallel
Strand 4	A	360	364	parallel
Strand 5	A	328	335	parallel
Strand 6	A	273	278	parallel
Strand 7	A	299	302	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	493	first strand
Strand 2	A	503	508	anti-parallel
Strand 3	A	553	560	anti-parallel
Strand 4	A	546	550	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	544	550	parallel
Strand 3	B	553	559	anti-parallel
Strand 4	B	504	508	anti-parallel
Strand 5	B	491	493	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	389	392	anti-parallel
Strand 4	B	360	364	parallel
Strand 5	B	328	335	parallel
Strand 6	B	273	278	parallel
Strand 7	B	299	302	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	189	199	anti-parallel
Strand 4	C	177	185	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	208	213	anti-parallel
Strand 3	C	220	224	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	100	102	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	142	anti-parallel
Strand 3	D	179	185	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	201	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	121	125	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	61	62	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	121	125	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	114	115	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	138	first strand
Strand 2	E	149	159	anti-parallel
Strand 3	E	189	199	anti-parallel
Strand 4	E	177	185	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	168	first strand
Strand 2	E	209	213	anti-parallel
Strand 3	E	220	223	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	47	50	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	100	102	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	72	77	anti-parallel
Strand 3	F	64	69	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	135	142	anti-parallel
Strand 3	F	179	185	anti-parallel
Strand 4	F	164	166	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	150	155	anti-parallel
Strand 3	F	196	201	anti-parallel
Strand 4	F	206	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LZ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LZ6