Analysis of interatomic Contacts of Structural Units in PDB entry:
7LZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LZP entry

There are 6 chains in PDB entry 7LZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LYS 438
C	GLN 1	SER 116
D	PRO 2	LYS 438
E	GLN 1	SER 130
G	GLN 1	SER 110
F	GLN 3	ARG 71

There are 33 helices in PDB entry 7LZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	80	100	Right-handed alpha
Helix 3	AA3	A	101	114	Right-handed alpha
Helix 4	AA4	A	130	132	Right-handed 310
Helix 5	AA5	A	216	233	Right-handed alpha
Helix 6	AA6	A	260	267	Right-handed alpha
Helix 7	AA7	A	269	274	Right-handed 310
Helix 8	AA8	A	275	299	Right-handed alpha
Helix 9	AA9	A	309	322	Right-handed alpha
Helix 10	AB1	A	334	347	Right-handed alpha
Helix 11	AB2	A	350	359	Right-handed alpha
Helix 12	AB3	A	395	399	Right-handed 310
Helix 13	AB4	A	401	405	Right-handed 310
Helix 14	AB5	A	409	413	Right-handed 310
Helix 15	AB6	C	86	90	Right-handed 310
Helix 16	AB7	D	53	57	Right-handed 310
Helix 17	AB8	D	80	101	Right-handed alpha
Helix 18	AB9	D	101	114	Right-handed alpha
Helix 19	AC1	D	130	132	Right-handed 310
Helix 20	AC2	D	216	233	Right-handed alpha
Helix 21	AC3	D	260	267	Right-handed alpha
Helix 22	AC4	D	269	274	Right-handed 310
Helix 23	AC5	D	275	299	Right-handed alpha
Helix 24	AC6	D	309	322	Right-handed alpha
Helix 25	AC7	D	334	347	Right-handed alpha
Helix 26	AC8	D	350	359	Right-handed alpha
Helix 27	AC9	D	395	399	Right-handed 310
Helix 28	AD1	D	401	405	Right-handed 310
Helix 29	AD2	D	409	413	Right-handed 310
Helix 30	AD3	E	87	91	Right-handed 310
Helix 31	AD4	G	86	90	Right-handed 310
Helix 32	AD5	B	87	91	Right-handed 310
Helix 33	AD6	H	86	90	Right-handed 310

There are 28 sheets in PDB entry 7LZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	42	48	anti-parallel
Strand 6	A	151	155	parallel
Strand 7	A	184	187	parallel
Strand 8	A	164	167	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	302	303	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	414	417	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	259	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	428	431	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	331	333	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	111	115	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	111	115	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	105	107	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	19	23	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	42	48	anti-parallel
Strand 6	D	151	155	parallel
Strand 7	D	184	187	parallel
Strand 8	D	164	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	302	303	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	372	375	anti-parallel
Strand 3	D	414	417	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	259	first strand
Strand 2	D	242	245	anti-parallel
Strand 3	D	429	431	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	325	first strand
Strand 2	D	331	333	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	124	129	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	124	129	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	119	120	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	70	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	105	109	parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	105	109	parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	100	101	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	111	114	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	111	114	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	105	107	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	32	39	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	119	120	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	32	39	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	124	126	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	70	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	91	97	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	91	97	anti-parallel
Strand 4	H	100	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LZP