Analysis of interatomic Contacts of Structural Units in PDB entry:
7M0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M0D entry

There are 10 chains in PDB entry 7M0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 237TRP 575
G
 C 1 C 7
F
 C 1 C 6
H
 G 1 G 4
B
 LEU 236TRP 575
K
 C 1 C 7
J
 C 1 C 6
L
 G 1 G 4
I
 A 1 G 4
E
 A 1 G 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7M0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 243Right-handed 310
Helix 2
AA2
A
244 249Right-handed 310
Helix 3
AA3
A
253 270Right-handed alpha
Helix 4
AA4
A
272 289Right-handed alpha
Helix 5
AA5
A
295 302Right-handed alpha
Helix 6
AA6
A
306 320Right-handed alpha
Helix 7
AA7
A
322 328Right-handed 310
Helix 8
AA8
A
331 340Right-handed alpha
Helix 9
AA9
A
345 355Right-handed alpha
Helix 10
AB1
A
359 367Right-handed alpha
Helix 11
AB2
A
370 379Right-handed alpha
Helix 12
AB3
A
379 385Right-handed alpha
Helix 13
AB4
A
389 405Right-handed alpha
Helix 14
AB5
A
415 420Right-handed alpha
Helix 15
AB6
A
442 454Right-handed alpha
Helix 16
AB7
A
495 497Right-handed 310
Helix 17
AB8
A
498 508Right-handed alpha
Helix 18
AB9
A
509 523Right-handed alpha
Helix 19
AC1
A
555 563Right-handed alpha
Helix 20
AC2
A
569 574Right-handed 310
Helix 21
AC3
B
239 243Right-handed 310
Helix 22
AC4
B
244 249Right-handed 310
Helix 23
AC5
B
253 270Right-handed alpha
Helix 24
AC6
B
272 289Right-handed alpha
Helix 25
AC7
B
295 302Right-handed alpha
Helix 26
AC8
B
306 320Right-handed alpha
Helix 27
AC9
B
322 328Right-handed 310
Helix 28
AD1
B
331 340Right-handed alpha
Helix 29
AD2
B
345 355Right-handed alpha
Helix 30
AD3
B
359 367Right-handed alpha
Helix 31
AD4
B
370 379Right-handed alpha
Helix 32
AD5
B
379 385Right-handed alpha
Helix 33
AD6
B
389 405Right-handed alpha
Helix 34
AD7
B
415 420Right-handed alpha
Helix 35
AD8
B
442 454Right-handed alpha
Helix 36
AD9
B
495 497Right-handed 310
Helix 37
AE1
B
498 508Right-handed alpha
Helix 38
AE2
B
509 523Right-handed alpha
Helix 39
AE3
B
555 563Right-handed alpha
Helix 40
AE4
B
569 573Right-handed 310
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There are 8 sheets in PDB entry 7M0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
424 425anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
486 493parallel
Strand 4
A
471 478anti-parallel
Strand 5
A
457 464anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
532 534anti-parallel
Strand 3
A
550 551anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
544 546anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
424 425anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 414first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
486 493parallel
Strand 4
B
470 478anti-parallel
Strand 5
B
457 467anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
532 534anti-parallel
Strand 3
B
550 551anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
537 538first strand
Strand 2
B
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il