Analysis of interatomic Contacts of Structural Units in PDB entry:
7M0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M0E entry

There are 13 chains in PDB entry 7M0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 238	TRP 575
G	G 2	C 7
F	C 1	C 6
H	G 1	C 3
B	TRP 239	TRP 575
K	DC 1	C 7
J	C 1	C 6
L	G 1	DG 4
C	TRP 239	TRP 575
O	DC 1	C 7
N	C 1	C 6
P	G 1	DG 4
D	TRP 239	PRO 435

There are 79 helices in PDB entry 7M0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	239	243	Right-handed 310
Helix 2	AA2	A	244	251	Right-handed 310
Helix 3	AA3	A	253	270	Right-handed alpha
Helix 4	AA4	A	272	289	Right-handed alpha
Helix 5	AA5	A	295	301	Right-handed alpha
Helix 6	AA6	A	306	320	Right-handed alpha
Helix 7	AA7	A	322	328	Right-handed 310
Helix 8	AA8	A	331	340	Right-handed alpha
Helix 9	AA9	A	345	355	Right-handed alpha
Helix 10	AB1	A	359	367	Right-handed alpha
Helix 11	AB2	A	370	379	Right-handed alpha
Helix 12	AB3	A	379	385	Right-handed alpha
Helix 13	AB4	A	389	407	Right-handed alpha
Helix 14	AB5	A	415	420	Right-handed alpha
Helix 15	AB6	A	442	454	Right-handed alpha
Helix 16	AB7	A	495	497	Right-handed 310
Helix 17	AB8	A	498	508	Right-handed alpha
Helix 18	AB9	A	509	523	Right-handed alpha
Helix 19	AC1	A	555	563	Right-handed alpha
Helix 20	AC2	A	569	574	Right-handed 310
Helix 21	AC3	B	244	249	Right-handed 310
Helix 22	AC4	B	253	270	Right-handed alpha
Helix 23	AC5	B	272	288	Right-handed alpha
Helix 24	AC6	B	295	302	Right-handed alpha
Helix 25	AC7	B	306	320	Right-handed alpha
Helix 26	AC8	B	322	328	Right-handed 310
Helix 27	AC9	B	331	340	Right-handed alpha
Helix 28	AD1	B	345	355	Right-handed alpha
Helix 29	AD2	B	359	367	Right-handed alpha
Helix 30	AD3	B	370	379	Right-handed alpha
Helix 31	AD4	B	379	385	Right-handed alpha
Helix 32	AD5	B	389	407	Right-handed alpha
Helix 33	AD6	B	415	421	Right-handed alpha
Helix 34	AD7	B	442	454	Right-handed alpha
Helix 35	AD8	B	495	497	Right-handed 310
Helix 36	AD9	B	498	508	Right-handed alpha
Helix 37	AE1	B	509	523	Right-handed alpha
Helix 38	AE2	B	555	564	Right-handed alpha
Helix 39	AE3	B	569	573	Right-handed 310
Helix 40	AE4	C	239	243	Right-handed 310
Helix 41	AE5	C	244	250	Right-handed 310
Helix 42	AE6	C	253	270	Right-handed alpha
Helix 43	AE7	C	272	288	Right-handed alpha
Helix 44	AE8	C	295	302	Right-handed alpha
Helix 45	AE9	C	306	320	Right-handed alpha
Helix 46	AF1	C	322	327	Right-handed alpha
Helix 47	AF2	C	331	340	Right-handed alpha
Helix 48	AF3	C	345	355	Right-handed alpha
Helix 49	AF4	C	359	367	Right-handed alpha
Helix 50	AF5	C	370	379	Right-handed alpha
Helix 51	AF6	C	381	385	Right-handed 310
Helix 52	AF7	C	389	407	Right-handed alpha
Helix 53	AF8	C	415	420	Right-handed alpha
Helix 54	AF9	C	440	454	Right-handed alpha
Helix 55	AG1	C	495	497	Right-handed 310
Helix 56	AG2	C	498	508	Right-handed alpha
Helix 57	AG3	C	509	523	Right-handed alpha
Helix 58	AG4	C	555	563	Right-handed alpha
Helix 59	AG5	C	569	574	Right-handed 310
Helix 60	AG6	D	239	243	Right-handed 310
Helix 61	AG7	D	244	250	Right-handed 310
Helix 62	AG8	D	253	270	Right-handed alpha
Helix 63	AG9	D	272	289	Right-handed alpha
Helix 64	AH1	D	295	301	Right-handed alpha
Helix 65	AH2	D	306	320	Right-handed alpha
Helix 66	AH3	D	322	326	Right-handed 310
Helix 67	AH4	D	331	340	Right-handed alpha
Helix 68	AH5	D	345	355	Right-handed alpha
Helix 69	AH6	D	359	367	Right-handed alpha
Helix 70	AH7	D	370	379	Right-handed alpha
Helix 71	AH8	D	379	385	Right-handed alpha
Helix 72	AH9	D	389	405	Right-handed alpha
Helix 73	AI1	D	415	420	Right-handed alpha
Helix 74	AI2	D	440	454	Right-handed alpha
Helix 75	AI3	D	495	497	Right-handed 310
Helix 76	AI4	D	498	508	Right-handed alpha
Helix 77	AI5	D	509	523	Right-handed alpha
Helix 78	AI6	D	555	564	Right-handed alpha
Helix 79	AI7	D	569	574	Right-handed 310

There are 12 sheets in PDB entry 7M0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	424	425	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	414	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	487	493	parallel
Strand 4	A	470	477	anti-parallel
Strand 5	A	457	467	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	532	534	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	424	425	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	487	493	parallel
Strand 4	B	470	477	anti-parallel
Strand 5	B	457	467	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	532	533	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	424	425	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	414	first strand
Strand 2	C	428	433	anti-parallel
Strand 3	C	487	493	parallel
Strand 4	C	470	477	anti-parallel
Strand 5	C	457	467	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	527	first strand
Strand 2	C	532	534	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	388	first strand
Strand 2	D	424	425	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	414	first strand
Strand 2	D	428	433	anti-parallel
Strand 3	D	487	493	parallel
Strand 4	D	470	477	anti-parallel
Strand 5	D	457	467	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	527	first strand
Strand 2	D	532	534	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M0E