Analysis of interatomic Contacts of Structural Units in PDB entry:
7M0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M0W entry

There are 2 chains in PDB entry 7M0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 42GLN 383
A
 ASP 448LEU 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7M0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
43 59Right-handed alpha
Helix 2
AA2
B
64 66Right-handed 310
Helix 3
AA3
B
104 116Right-handed alpha
Helix 4
AA4
B
117 120Right-handed 310
Helix 5
AA5
B
151 159Right-handed alpha
Helix 6
AA6
B
162 184Right-handed alpha
Helix 7
AA7
B
192 194Right-handed 310
Helix 8
AA8
B
212 219Right-handed alpha
Helix 9
AA9
B
220 222Right-handed 310
Helix 10
AB1
B
242 259Right-handed alpha
Helix 11
AB2
B
267 273Right-handed alpha
Helix 12
AB3
B
309 320Right-handed alpha
Helix 13
AB4
B
331 342Right-handed alpha
Helix 14
AB5
B
351 357Right-handed alpha
Helix 15
AB6
B
358 367Right-handed alpha
Helix 16
AB7
B
370 380Right-handed alpha
Helix 17
AB8
A
491 507Right-handed alpha
Helix 18
AB9
A
536 543Right-handed alpha
Helix 19
AC1
A
549 570Right-handed alpha
Helix 20
AC2
A
578 580Right-handed 310
Helix 21
AC3
A
586 588Right-handed 310
Helix 22
AC4
A
616 620Right-handed 310
Helix 23
AC5
A
621 627Right-handed alpha
Helix 24
AC6
A
634 652Right-handed alpha
Helix 25
AC7
A
661 671Right-handed alpha
Helix 26
AC8
A
677 681Right-handed 310
Helix 27
AC9
A
686 697Right-handed alpha
Helix 28
AD1
A
700 704Right-handed 310
Helix 29
AD2
A
706 720Right-handed alpha
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There are 4 sheets in PDB entry 7M0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 77first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
516 520parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
479 485anti-parallel
Strand 5
A
469 475anti-parallel
Strand 6
A
462 465anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il