Analysis of interatomic Contacts of Structural Units in PDB entry:
7M12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M12 entry

There are 2 chains in PDB entry 7M12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 37	LYS 701
A	SER 37	PRO 700

There are 41 helices in PDB entry 7M12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	38	51	Right-handed alpha
Helix 2	AA2	B	55	64	Right-handed alpha
Helix 3	AA3	B	145	156	Right-handed alpha
Helix 4	AA4	B	177	196	Right-handed alpha
Helix 5	AA5	B	203	210	Right-handed alpha
Helix 6	AA6	B	269	274	Right-handed alpha
Helix 7	AA7	B	276	290	Right-handed alpha
Helix 8	AA8	B	293	300	Right-handed alpha
Helix 9	AA9	B	324	343	Right-handed alpha
Helix 10	AB1	B	347	359	Right-handed alpha
Helix 11	AB2	B	408	429	Right-handed alpha
Helix 12	AB3	B	472	480	Right-handed alpha
Helix 13	AB4	B	486	498	Right-handed alpha
Helix 14	AB5	B	501	514	Right-handed alpha
Helix 15	AB6	B	550	558	Right-handed alpha
Helix 16	AB7	B	574	584	Right-handed alpha
Helix 17	AB8	B	587	590	Right-handed 310
Helix 18	AB9	B	591	596	Right-handed alpha
Helix 19	AC1	B	602	605	Right-handed 310
Helix 20	AC2	B	640	642	Right-handed 310
Helix 21	AC3	A	38	51	Right-handed alpha
Helix 22	AC4	A	55	62	Right-handed alpha
Helix 23	AC5	A	145	156	Right-handed alpha
Helix 24	AC6	A	163	172	Right-handed alpha
Helix 25	AC7	A	176	196	Right-handed alpha
Helix 26	AC8	A	269	274	Right-handed alpha
Helix 27	AC9	A	275	290	Right-handed alpha
Helix 28	AD1	A	293	298	Right-handed 310
Helix 29	AD2	A	324	343	Right-handed alpha
Helix 30	AD3	A	348	359	Right-handed alpha
Helix 31	AD4	A	374	378	Right-handed 310
Helix 32	AD5	A	402	406	Right-handed 310
Helix 33	AD6	A	408	429	Right-handed alpha
Helix 34	AD7	A	471	481	Right-handed alpha
Helix 35	AD8	A	482	497	Right-handed alpha
Helix 36	AD9	A	500	514	Right-handed alpha
Helix 37	AE1	A	550	558	Right-handed alpha
Helix 38	AE2	A	574	583	Right-handed alpha
Helix 39	AE3	A	587	590	Right-handed 310
Helix 40	AE4	A	591	597	Right-handed alpha
Helix 41	AE5	A	640	642	Right-handed 310

There are 14 sheets in PDB entry 7M12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	117	119	anti-parallel
Strand 4	B	364	365	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	98	102	anti-parallel
Strand 3	B	678	684	anti-parallel
Strand 4	B	569	572	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	381	382	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	304	308	parallel
Strand 3	B	264	268	parallel
Strand 4	B	388	392	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	435	438	parallel
Strand 3	B	543	544	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	608	first strand
Strand 2	B	637	638	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	621	625	anti-parallel
Strand 3	B	659	663	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	117	120	anti-parallel
Strand 3	A	363	364	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	98	104	anti-parallel
Strand 3	A	678	683	anti-parallel
Strand 4	A	571	572	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	381	382	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	305	308	parallel
Strand 3	A	264	268	parallel
Strand 4	A	388	392	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	435	437	parallel
Strand 3	A	543	544	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	606	609	anti-parallel
Strand 3	A	666	669	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	633	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	659	663	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M12

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M12