Analysis of interatomic Contacts of Structural Units in PDB entry:
7M13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M13 entry

There are 2 chains in PDB entry 7M13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLN 345
B
 HIS 0THR 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7M13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
44 56Right-handed alpha
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
75 97Right-handed alpha
Helix 5
AA5
A
109 111Right-handed 310
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
133 155Right-handed alpha
Helix 8
AA8
A
179 196Right-handed alpha
Helix 9
AA9
A
198 207Right-handed alpha
Helix 10
AB1
A
210 221Right-handed alpha
Helix 11
AB2
A
243 257Right-handed alpha
Helix 12
AB3
A
258 263Right-handed alpha
Helix 13
AB4
A
283 295Right-handed alpha
Helix 14
AB5
A
317 323Right-handed alpha
Helix 15
AB6
A
330 345Right-handed alpha
Helix 16
AB7
B
14 27Right-handed alpha
Helix 17
AB8
B
44 56Right-handed alpha
Helix 18
AB9
B
75 97Right-handed alpha
Helix 19
AC1
B
109 111Right-handed 310
Helix 20
AC2
B
120 124Right-handed 310
Helix 21
AC3
B
133 155Right-handed alpha
Helix 22
AC4
B
179 196Right-handed alpha
Helix 23
AC5
B
198 207Right-handed alpha
Helix 24
AC6
B
210 221Right-handed alpha
Helix 25
AC7
B
243 257Right-handed alpha
Helix 26
AC8
B
258 263Right-handed alpha
Helix 27
AC9
B
283 295Right-handed alpha
Helix 28
AD1
B
317 323Right-handed alpha
Helix 29
AD2
B
330 344Right-handed alpha
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There are 8 sheets in PDB entry 7M13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
7 10parallel
Strand 3
A
59 62parallel
Strand 4
A
101 107parallel
Strand 5
A
158 163parallel
Strand 6
A
273 274parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
241 242parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
299 302parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
281 282anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
7 10parallel
Strand 3
B
59 62parallel
Strand 4
B
101 107parallel
Strand 5
B
158 163parallel
Strand 6
B
273 274parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
241 242parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
299 303parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
281 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il