Analysis of interatomic Contacts of Structural Units in PDB entry:
7M1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M1P entry

There is 1 chain in PDB entry 7M1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LYS 2250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 7M1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
23 46Right-handed alpha
Helix 3
AA3
A
62 64Right-handed 310
Helix 4
AA4
A
65 76Right-handed alpha
Helix 5
AA5
A
86 90Right-handed 310
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
118 129Right-handed alpha
Helix 8
AA8
A
280 289Right-handed alpha
Helix 9
AA9
A
292 297Right-handed alpha
Helix 10
AB1
A
299 305Right-handed alpha
Helix 11
AB2
A
311 324Right-handed alpha
Helix 12
AB3
A
369 380Right-handed alpha
Helix 13
AB4
A
390 395Right-handed alpha
Helix 14
AB5
A
404 413Right-handed alpha
Helix 15
AB6
A
415 430Right-handed alpha
Helix 16
AB7
A
430 439Right-handed alpha
Helix 17
AB8
A
439 444Right-handed alpha
Helix 18
AB9
A
445 454Right-handed alpha
Helix 19
AC1
A
502 518Right-handed alpha
Helix 20
AC2
A
531 542Right-handed alpha
Helix 21
AC3
A
574 578Right-handed 310
Helix 22
AC4
A
607 624Right-handed alpha
Helix 23
AC5
A
647 650Right-handed 310
Helix 24
AC6
A
654 680Right-handed alpha
Helix 25
AC7
A
681 690Right-handed alpha
Helix 26
AC8
A
692 722Right-handed alpha
Helix 27
AC9
A
731 752Right-handed alpha
Helix 28
AD1
A
757 772Right-handed alpha
Helix 29
AD2
A
773 781Right-handed alpha
Helix 30
AD3
A
793 796Right-handed 310
Helix 31
AD4
A
797 814Right-handed alpha
Helix 32
AD5
A
820 824Right-handed 310
Helix 33
AD6
A
827 832Right-handed alpha
Helix 34
AD7
A
835 861Right-handed alpha
Helix 35
AD8
A
970 977Right-handed alpha
Helix 36
AD9
A
988 992Right-handed 310
Helix 37
AE1
A
993 997Right-handed 310
Helix 38
AE2
A
1001 1005Right-handed 310
Helix 39
AE3
A
1019 1030Right-handed alpha
Helix 40
AE4
A
1035 1050Right-handed alpha
Helix 41
AE5
A
1063 1074Right-handed alpha
Helix 42
AE6
A
1093 1106Right-handed alpha
Helix 43
AE7
A
1119 1127Right-handed alpha
Helix 44
AE8
A
1143 1149Right-handed alpha
Helix 45
AE9
A
1205 1216Right-handed alpha
Helix 46
AF1
A
1244 1253Right-handed alpha
Helix 47
AF2
A
1268 1277Right-handed alpha
Helix 48
AF3
A
1350 1368Right-handed alpha
Helix 49
AF4
A
1373 1378Right-handed alpha
Helix 50
AF5
A
1378 1393Right-handed alpha
Helix 51
AF6
A
1406 1410Right-handed 310
Helix 52
AF7
A
1424 1436Right-handed alpha
Helix 53
AF8
A
1470 1475Right-handed alpha
Helix 54
AF9
A
1530 1546Right-handed alpha
Helix 55
AG1
A
1575 1586Right-handed alpha
Helix 56
AG2
A
1592 1601Right-handed alpha
Helix 57
AG3
A
1601 1610Right-handed alpha
Helix 58
AG4
A
1626 1643Right-handed alpha
Helix 59
AG5
A
1648 1652Right-handed 310
Helix 60
AG6
A
1664 1691Right-handed alpha
Helix 61
AG7
A
1691 1707Right-handed alpha
Helix 62
AG8
A
1709 1716Right-handed alpha
Helix 63
AG9
A
1719 1747Right-handed alpha
Helix 64
AH1
A
1750 1754Right-handed 310
Helix 65
AH2
A
1759 1779Right-handed alpha
Helix 66
AH3
A
1780 1785Right-handed alpha
Helix 67
AH4
A
1789 1813Right-handed alpha
Helix 68
AH5
A
1820 1831Right-handed alpha
Helix 69
AH6
A
1832 1835Right-handed 310
Helix 70
AH7
A
1836 1861Right-handed alpha
Helix 71
AH8
A
1875 1898Right-handed alpha
Helix 72
AH9
A
1978 1986Right-handed alpha
Helix 73
AI1
A
2009 2014Right-handed alpha
Helix 74
AI2
A
2033 2039Right-handed alpha
Helix 75
AI3
A
2049 2056Right-handed alpha
Helix 76
AI4
A
2067 2071Right-handed 310
Helix 77
AI5
A
2072 2084Right-handed alpha
Helix 78
AI6
A
2102 2120Right-handed alpha
Helix 79
AI7
A
2129 2136Right-handed alpha
Helix 80
AI8
A
2153 2161Right-handed alpha
Helix 81
AI9
A
2182 2192Right-handed alpha
Helix 82
AJ1
A
2215 2219Right-handed 310
Helix 83
AJ2
A
2240 2249Right-handed alpha
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There are 10 sheets in PDB entry 7M1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
642 645anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
631 636anti-parallel
Strand 3
A
1614 1619parallel
Strand 4
A
1560 1562anti-parallel
Strand 5
A
1414 1419parallel
Strand 6
A
1521 1523parallel
Strand 7
A
1514 1515anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
398 400parallel
Strand 3
A
549 551parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 571first strand
Strand 2
A
1653 1658parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 933first strand
Strand 2
A
951 952anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
961 962first strand
Strand 2
A
1131 1132parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1008first strand
Strand 2
A
1084 1086parallel
Strand 3
A
1114 1116parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1155 1158first strand
Strand 2
A
1230 1233anti-parallel
Strand 3
A
1220 1223anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2091 2094first strand
Strand 2
A
2122 2125parallel
Strand 3
A
1967 1972parallel
Strand 4
A
2140 2144parallel
Strand 5
A
2147 2150anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2205 2209first strand
Strand 2
A
2166 2170anti-parallel
Strand 3
A
2233 2237anti-parallel
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