Analysis of interatomic Contacts of Structural Units in PDB entry:
7M1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M1T entry

There are 2 chains in PDB entry 7M1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5HIS 329
B
 ILE 4HIS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 7M1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 34Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
50 57Right-handed alpha
Helix 4
AA4
A
59 91Right-handed alpha
Helix 5
AA5
A
92 110Right-handed alpha
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
121 140Right-handed alpha
Helix 8
AA8
A
140 148Right-handed alpha
Helix 9
AA9
A
166 181Right-handed alpha
Helix 10
AB1
A
184 198Right-handed alpha
Helix 11
AB2
A
210 212Right-handed 310
Helix 12
AB3
A
220 232Right-handed alpha
Helix 13
AB4
A
252 257Right-handed alpha
Helix 14
AB5
A
283 294Right-handed alpha
Helix 15
AB6
A
314 323Right-handed alpha
Helix 16
AB7
B
5 32Right-handed alpha
Helix 17
AB8
B
35 46Right-handed alpha
Helix 18
AB9
B
49 58Right-handed alpha
Helix 19
AC1
B
59 91Right-handed alpha
Helix 20
AC2
B
93 107Right-handed alpha
Helix 21
AC3
B
111 121Right-handed alpha
Helix 22
AC4
B
122 127Right-handed alpha
Helix 23
AC5
B
129 140Right-handed alpha
Helix 24
AC6
B
140 150Right-handed alpha
Helix 25
AC7
B
151 154Right-handed 310
Helix 26
AC8
B
166 181Right-handed alpha
Helix 27
AC9
B
184 196Right-handed alpha
Helix 28
AD1
B
201 205Right-handed 310
Helix 29
AD2
B
210 212Right-handed 310
Helix 30
AD3
B
220 232Right-handed alpha
Helix 31
AD4
B
252 257Right-handed alpha
Helix 32
AD5
B
267 272Right-handed alpha
Helix 33
AD6
B
283 295Right-handed alpha
Helix 34
AD7
B
314 323Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7M1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
277 279parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
235 239parallel
Strand 3
A
246 251anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
298 302anti-parallel
Strand 4
B
276 279parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
235 239parallel
Strand 3
B
246 251anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il