Analysis of interatomic Contacts of Structural Units in PDB entry:
7M1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M1U entry

There are 2 chains in PDB entry 7M1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2HIS 324
B
 MET 1HIS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7M1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 34Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
50 58Right-handed alpha
Helix 4
AA4
A
59 90Right-handed alpha
Helix 5
AA5
A
93 110Right-handed alpha
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
121 140Right-handed alpha
Helix 8
AA8
A
140 151Right-handed alpha
Helix 9
AA9
A
166 181Right-handed alpha
Helix 10
AB1
A
187 199Right-handed alpha
Helix 11
AB2
A
201 206Right-handed alpha
Helix 12
AB3
A
210 212Right-handed 310
Helix 13
AB4
A
220 232Right-handed alpha
Helix 14
AB5
A
252 262Right-handed alpha
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
283 294Right-handed alpha
Helix 17
AB8
A
314 324Right-handed alpha
Helix 18
AB9
B
2 34Right-handed alpha
Helix 19
AC1
B
35 45Right-handed alpha
Helix 20
AC2
B
51 59Right-handed alpha
Helix 21
AC3
B
59 91Right-handed alpha
Helix 22
AC4
B
92 109Right-handed alpha
Helix 23
AC5
B
111 121Right-handed alpha
Helix 24
AC6
B
121 129Right-handed alpha
Helix 25
AC7
B
129 140Right-handed alpha
Helix 26
AC8
B
140 148Right-handed alpha
Helix 27
AC9
B
170 180Right-handed alpha
Helix 28
AD1
B
184 186Right-handed 310
Helix 29
AD2
B
187 200Right-handed alpha
Helix 30
AD3
B
201 206Right-handed alpha
Helix 31
AD4
B
210 212Right-handed 310
Helix 32
AD5
B
220 231Right-handed alpha
Helix 33
AD6
B
252 261Right-handed alpha
Helix 34
AD7
B
267 272Right-handed alpha
Helix 35
AD8
B
283 294Right-handed alpha
Helix 36
AD9
B
314 323Right-handed alpha
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There are 4 sheets in PDB entry 7M1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
298 302anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
235 239parallel
Strand 3
A
248 251anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
298 302anti-parallel
Strand 4
B
277 279parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
235 239parallel
Strand 3
B
246 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il