Analysis of interatomic Contacts of Structural Units in PDB entry:
7M1Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M1Z entry

There are 2 chains in PDB entry 7M1Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	GLU 370
B	PRO -4	ILE 269

There are 68 helices in PDB entry 7M1Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	18	29	Right-handed alpha
Helix 3	AA3	A	33	41	Right-handed alpha
Helix 4	AA4	A	46	54	Right-handed alpha
Helix 5	AA5	A	88	101	Right-handed alpha
Helix 6	AA6	A	123	133	Right-handed alpha
Helix 7	AA7	A	134	146	Right-handed alpha
Helix 8	AA8	A	146	152	Right-handed alpha
Helix 9	AA9	A	165	167	Right-handed 310
Helix 10	AB1	A	182	201	Right-handed alpha
Helix 11	AB2	A	229	232	Right-handed 310
Helix 12	AB3	A	236	252	Right-handed alpha
Helix 13	AB4	A	254	276	Right-handed alpha
Helix 14	AB5	A	279	291	Right-handed alpha
Helix 15	AB6	A	330	341	Right-handed alpha
Helix 16	AB7	A	344	370	Right-handed alpha
Helix 17	AB8	B	0	5	Right-handed 310
Helix 18	AB9	B	13	17	Right-handed 310
Helix 19	AC1	B	18	29	Right-handed alpha
Helix 20	AC2	B	33	41	Right-handed alpha
Helix 21	AC3	B	46	54	Right-handed alpha
Helix 22	AC4	B	88	101	Right-handed alpha
Helix 23	AC5	B	123	133	Right-handed alpha
Helix 24	AC6	B	134	146	Right-handed alpha
Helix 25	AC7	B	146	152	Right-handed alpha
Helix 26	AC8	B	182	201	Right-handed alpha
Helix 27	AC9	B	215	217	Right-handed 310
Helix 28	AD1	B	229	232	Right-handed 310
Helix 29	AD2	B	236	252	Right-handed alpha
Helix 30	AD3	B	254	276	Right-handed alpha
Helix 31	AD4	B	279	291	Right-handed alpha
Helix 32	AD5	B	330	341	Right-handed alpha
Helix 33	AD6	B	344	369	Right-handed alpha
Helix 34	AD7	B	371	389	Right-handed alpha
Helix 35	AD8	B	393	405	Right-handed alpha
Helix 36	AD9	B	409	421	Right-handed alpha
Helix 37	AE1	C	13	17	Right-handed 310
Helix 38	AE2	C	18	29	Right-handed alpha
Helix 39	AE3	C	33	40	Right-handed alpha
Helix 40	AE4	C	46	54	Right-handed alpha
Helix 41	AE5	C	88	101	Right-handed alpha
Helix 42	AE6	C	123	133	Right-handed alpha
Helix 43	AE7	C	134	146	Right-handed alpha
Helix 44	AE8	C	147	152	Right-handed alpha
Helix 45	AE9	C	182	201	Right-handed alpha
Helix 46	AF1	C	229	232	Right-handed 310
Helix 47	AF2	C	236	252	Right-handed alpha
Helix 48	AF3	C	254	276	Right-handed alpha
Helix 49	AF4	C	279	291	Right-handed alpha
Helix 50	AF5	C	330	341	Right-handed alpha
Helix 51	AF6	C	344	368	Right-handed alpha
Helix 52	AF7	C	371	388	Right-handed alpha
Helix 53	AF8	C	393	403	Right-handed alpha
Helix 54	AF9	C	409	421	Right-handed alpha
Helix 55	AG1	D	18	29	Right-handed alpha
Helix 56	AG2	D	33	41	Right-handed alpha
Helix 57	AG3	D	46	54	Right-handed alpha
Helix 58	AG4	D	88	101	Right-handed alpha
Helix 59	AG5	D	123	134	Right-handed alpha
Helix 60	AG6	D	134	146	Right-handed alpha
Helix 61	AG7	D	146	152	Right-handed alpha
Helix 62	AG8	D	182	201	Right-handed alpha
Helix 63	AG9	D	229	232	Right-handed 310
Helix 64	AH1	D	236	254	Right-handed alpha
Helix 65	AH2	D	254	276	Right-handed alpha
Helix 66	AH3	D	279	291	Right-handed alpha
Helix 67	AH4	D	330	341	Right-handed alpha
Helix 68	AH5	D	344	368	Right-handed alpha

There are 13 sheets in PDB entry 7M1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	83	first strand
Strand 2	A	57	72	anti-parallel
Strand 3	B	57	73	anti-parallel
Strand 4	B	76	83	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	219	227	anti-parallel
Strand 3	A	309	317	anti-parallel
Strand 4	A	301	306	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	164	first strand
Strand 2	A	168	176	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	205	212	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	296	297	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	108	first strand
Strand 2	B	219	227	anti-parallel
Strand 3	B	309	317	anti-parallel
Strand 4	B	301	306	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	164	first strand
Strand 2	B	168	176	anti-parallel
Strand 3	B	112	119	anti-parallel
Strand 4	B	205	211	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	296	297	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	83	first strand
Strand 2	C	57	73	anti-parallel
Strand 3	D	57	73	anti-parallel
Strand 4	D	76	83	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	108	first strand
Strand 2	C	219	227	anti-parallel
Strand 3	C	309	317	anti-parallel
Strand 4	C	301	306	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	163	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	205	211	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	296	297	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	108	first strand
Strand 2	D	219	227	anti-parallel
Strand 3	D	309	317	anti-parallel
Strand 4	D	301	306	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	164	first strand
Strand 2	D	168	176	anti-parallel
Strand 3	D	112	119	anti-parallel
Strand 4	D	205	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M1Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M1Z