Analysis of interatomic Contacts of Structural Units in PDB entry:
7M2Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M2Y entry

There are 5 chains in PDB entry 7M2Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 453
B	MET 1	ASP 453
C	SER 163	ARG 846
D	MET 1	PRO 814
U	ASP 112	LEU 142

There are109 helices in PDB entry 7M2Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	72	83	Right-handed alpha
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	104	115	Right-handed alpha
Helix 5	AA5	A	115	129	Right-handed alpha
Helix 6	AA6	A	149	162	Right-handed alpha
Helix 7	AA7	A	179	198	Right-handed alpha
Helix 8	AA8	A	205	217	Right-handed alpha
Helix 9	AA9	A	226	235	Right-handed alpha
Helix 10	AB1	A	239	244	Right-handed alpha
Helix 11	AB2	A	252	260	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed 310
Helix 13	AB4	A	290	297	Right-handed alpha
Helix 14	AB5	A	298	299	Right-handed 310
Helix 15	AB6	A	300	304	Right-handed 310
Helix 16	AB7	A	327	335	Right-handed alpha
Helix 17	AB8	A	335	340	Right-handed alpha
Helix 18	AB9	A	383	386	Right-handed 310
Helix 19	AC1	A	387	399	Right-handed alpha
Helix 20	AC2	A	404	409	Right-handed 310
Helix 21	AC3	A	410	415	Right-handed alpha
Helix 22	AC4	A	415	440	Right-handed alpha
Helix 23	AC5	A	442	452	Right-handed alpha
Helix 24	AC6	B	12	29	Right-handed alpha
Helix 25	AC7	B	72	81	Right-handed alpha
Helix 26	AC8	B	88	90	Right-handed 310
Helix 27	AC9	B	97	102	Right-handed alpha
Helix 28	AD1	B	103	115	Right-handed alpha
Helix 29	AD2	B	115	128	Right-handed alpha
Helix 30	AD3	B	144	162	Right-handed alpha
Helix 31	AD4	B	183	195	Right-handed alpha
Helix 32	AD5	B	206	217	Right-handed alpha
Helix 33	AD6	B	223	226	Right-handed 310
Helix 34	AD7	B	227	237	Right-handed alpha
Helix 35	AD8	B	239	244	Right-handed alpha
Helix 36	AD9	B	251	260	Right-handed alpha
Helix 37	AE1	B	290	297	Right-handed alpha
Helix 38	AE2	B	298	304	Right-handed 310
Helix 39	AE3	B	329	340	Right-handed alpha
Helix 40	AE4	B	345	349	Right-handed 310
Helix 41	AE5	B	382	386	Right-handed 310
Helix 42	AE6	B	387	399	Right-handed alpha
Helix 43	AE7	B	415	440	Right-handed alpha
Helix 44	AE8	B	441	442	Right-handed 310
Helix 45	AE9	B	443	447	Right-handed 310
Helix 46	AF1	C	166	172	Right-handed alpha
Helix 47	AF2	C	173	175	Right-handed 310
Helix 48	AF3	C	180	193	Right-handed alpha
Helix 49	AF4	C	214	243	Right-handed alpha
Helix 50	AF5	C	247	274	Right-handed alpha
Helix 51	AF6	C	279	301	Right-handed alpha
Helix 52	AF7	C	303	307	Right-handed 310
Helix 53	AF8	C	308	320	Right-handed alpha
Helix 54	AF9	C	324	353	Right-handed alpha
Helix 55	AG1	C	387	390	Right-handed 310
Helix 56	AG2	C	395	416	Right-handed alpha
Helix 57	AG3	C	418	435	Right-handed alpha
Helix 58	AG4	C	442	467	Right-handed alpha
Helix 59	AG5	C	469	482	Right-handed alpha
Helix 60	AG6	C	485	496	Right-handed alpha
Helix 61	AG7	C	496	502	Right-handed alpha
Helix 62	AG8	C	508	523	Right-handed alpha
Helix 63	AG9	C	525	530	Right-handed alpha
Helix 64	AH1	C	535	539	Right-handed 310
Helix 65	AH2	C	554	556	Right-handed 310
Helix 66	AH3	C	568	573	Right-handed alpha
Helix 67	AH4	C	582	615	Right-handed alpha
Helix 68	AH5	C	621	627	Right-handed alpha
Helix 69	AH6	C	628	655	Right-handed alpha
Helix 70	AH7	C	656	670	Right-handed alpha
Helix 71	AH8	C	720	737	Right-handed alpha
Helix 72	AH9	C	758	790	Right-handed alpha
Helix 73	AI1	C	800	832	Right-handed alpha
Helix 74	AI2	C	835	845	Right-handed alpha
Helix 75	AI3	D	43	47	Right-handed 310
Helix 76	AI4	D	51	67	Right-handed alpha
Helix 77	AI5	D	99	126	Right-handed alpha
Helix 78	AI6	D	132	149	Right-handed alpha
Helix 79	AI7	D	149	157	Right-handed alpha
Helix 80	AI8	D	157	165	Right-handed alpha
Helix 81	AI9	D	169	180	Right-handed alpha
Helix 82	AJ1	D	181	206	Right-handed alpha
Helix 83	AJ2	D	225	229	Right-handed 310
Helix 84	AJ3	D	244	258	Right-handed alpha
Helix 85	AJ4	D	261	290	Right-handed alpha
Helix 86	AJ5	D	329	331	Right-handed 310
Helix 87	AJ6	D	337	362	Right-handed alpha
Helix 88	AJ7	D	380	386	Right-handed alpha
Helix 89	AJ8	D	388	412	Right-handed alpha
Helix 90	AJ9	D	414	427	Right-handed alpha
Helix 91	AK1	D	431	447	Right-handed alpha
Helix 92	AK2	D	448	452	Right-handed 310
Helix 93	AK3	D	457	471	Right-handed alpha
Helix 94	AK4	D	476	481	Right-handed alpha
Helix 95	AK5	D	490	495	Right-handed alpha
Helix 96	AK6	D	496	498	Right-handed 310
Helix 97	AK7	D	567	572	Right-handed alpha
Helix 98	AK8	D	575	607	Right-handed alpha
Helix 99	AK9	D	609	614	Right-handed 310
Helix 100	AL1	D	618	625	Right-handed alpha
Helix 101	AL2	D	625	651	Right-handed alpha
Helix 102	AL3	D	651	663	Right-handed alpha
Helix 103	AL4	D	668	685	Right-handed alpha
Helix 104	AL5	D	686	691	Right-handed alpha
Helix 105	AL6	D	692	717	Right-handed alpha
Helix 106	AL7	D	718	725	Right-handed 310
Helix 107	AL8	D	753	786	Right-handed alpha
Helix 108	AL9	D	802	810	Right-handed alpha
Helix 109	AM1	U	118	140	Right-handed alpha

There are 12 sheets in PDB entry 7M2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	7	9	parallel
Strand 3	A	136	141	parallel
Strand 4	A	167	172	parallel
Strand 5	A	201	204	parallel
Strand 6	A	267	272	parallel
Strand 7	A	372	380	anti-parallel
Strand 8	A	315	324	anti-parallel
Strand 9	A	353	356	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	62	64	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	66	70	parallel
Strand 3	B	4	10	parallel
Strand 4	B	133	140	parallel
Strand 5	B	166	172	parallel
Strand 6	B	201	204	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	62	64	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	373	380	anti-parallel
Strand 3	B	315	323	anti-parallel
Strand 4	B	353	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	D	8	10	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	383	385	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	545	first strand
Strand 2	C	558	562	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	683	first strand
Strand 2	C	689	691	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	92	94	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	235	first strand
Strand 2	D	324	327	parallel
Strand 3	D	301	303	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	486	first strand
Strand 2	D	560	564	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M2Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M2Y