Analysis of interatomic Contacts of Structural Units in PDB entry:
7M2Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M2Z entry

There are 4 chains in PDB entry 7M2Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASP 453
A	GLY 3	LEU 446
C	SER 163	ARG 846
D	MET 1	PRO 814

There are 92 helices in PDB entry 7M2Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	11	29	Right-handed alpha
Helix 2	AA2	B	72	83	Right-handed alpha
Helix 3	AA3	B	88	90	Right-handed 310
Helix 4	AA4	B	103	128	Right-handed alpha
Helix 5	AA5	B	144	159	Right-handed alpha
Helix 6	AA6	B	182	195	Right-handed alpha
Helix 7	AA7	B	206	217	Right-handed alpha
Helix 8	AA8	B	228	238	Right-handed alpha
Helix 9	AA9	B	251	260	Right-handed alpha
Helix 10	AB1	B	290	298	Right-handed alpha
Helix 11	AB2	B	327	342	Right-handed alpha
Helix 12	AB3	B	382	386	Right-handed 310
Helix 13	AB4	B	387	392	Right-handed alpha
Helix 14	AB5	B	393	399	Right-handed alpha
Helix 15	AB6	B	415	442	Right-handed alpha
Helix 16	AB7	B	446	451	Right-handed alpha
Helix 17	AB8	A	11	29	Right-handed alpha
Helix 18	AB9	A	73	78	Right-handed alpha
Helix 19	AC1	A	88	92	Right-handed 310
Helix 20	AC2	A	104	128	Right-handed alpha
Helix 21	AC3	A	144	162	Right-handed alpha
Helix 22	AC4	A	178	181	Right-handed 310
Helix 23	AC5	A	182	198	Right-handed alpha
Helix 24	AC6	A	206	217	Right-handed alpha
Helix 25	AC7	A	223	244	Right-handed alpha
Helix 26	AC8	A	251	257	Right-handed alpha
Helix 27	AC9	A	290	298	Right-handed alpha
Helix 28	AD1	A	299	304	Right-handed 310
Helix 29	AD2	A	327	342	Right-handed alpha
Helix 30	AD3	A	383	398	Right-handed alpha
Helix 31	AD4	A	404	408	Right-handed 310
Helix 32	AD5	A	415	442	Right-handed alpha
Helix 33	AD6	C	166	172	Right-handed alpha
Helix 34	AD7	C	180	192	Right-handed alpha
Helix 35	AD8	C	214	242	Right-handed alpha
Helix 36	AD9	C	247	275	Right-handed alpha
Helix 37	AE1	C	279	301	Right-handed alpha
Helix 38	AE2	C	308	320	Right-handed alpha
Helix 39	AE3	C	324	353	Right-handed alpha
Helix 40	AE4	C	387	390	Right-handed 310
Helix 41	AE5	C	395	415	Right-handed alpha
Helix 42	AE6	C	418	435	Right-handed alpha
Helix 43	AE7	C	442	467	Right-handed alpha
Helix 44	AE8	C	472	481	Right-handed alpha
Helix 45	AE9	C	485	496	Right-handed alpha
Helix 46	AF1	C	496	501	Right-handed alpha
Helix 47	AF2	C	508	523	Right-handed alpha
Helix 48	AF3	C	525	531	Right-handed alpha
Helix 49	AF4	C	535	540	Right-handed alpha
Helix 50	AF5	C	567	572	Right-handed alpha
Helix 51	AF6	C	581	615	Right-handed alpha
Helix 52	AF7	C	621	656	Right-handed alpha
Helix 53	AF8	C	656	670	Right-handed alpha
Helix 54	AF9	C	720	737	Right-handed alpha
Helix 55	AG1	C	757	792	Right-handed alpha
Helix 56	AG2	C	799	834	Right-handed alpha
Helix 57	AG3	C	835	845	Right-handed alpha
Helix 58	AG4	D	42	47	Right-handed 310
Helix 59	AG5	D	48	50	Right-handed 310
Helix 60	AG6	D	51	67	Right-handed alpha
Helix 61	AG7	D	99	104	Right-handed alpha
Helix 62	AG8	D	105	126	Right-handed alpha
Helix 63	AG9	D	127	131	Right-handed 310
Helix 64	AH1	D	132	148	Right-handed alpha
Helix 65	AH2	D	149	165	Right-handed alpha
Helix 66	AH3	D	169	180	Right-handed alpha
Helix 67	AH4	D	181	206	Right-handed alpha
Helix 68	AH5	D	243	258	Right-handed alpha
Helix 69	AH6	D	261	276	Right-handed alpha
Helix 70	AH7	D	276	290	Right-handed alpha
Helix 71	AH8	D	328	331	Right-handed 310
Helix 72	AH9	D	337	362	Right-handed alpha
Helix 73	AI1	D	367	371	Right-handed 310
Helix 74	AI2	D	380	387	Right-handed alpha
Helix 75	AI3	D	389	411	Right-handed alpha
Helix 76	AI4	D	414	427	Right-handed alpha
Helix 77	AI5	D	431	450	Right-handed alpha
Helix 78	AI6	D	458	472	Right-handed alpha
Helix 79	AI7	D	476	481	Right-handed alpha
Helix 80	AI8	D	490	496	Right-handed alpha
Helix 81	AI9	D	570	574	Right-handed 310
Helix 82	AJ1	D	576	607	Right-handed alpha
Helix 83	AJ2	D	609	613	Right-handed 310
Helix 84	AJ3	D	618	625	Right-handed alpha
Helix 85	AJ4	D	625	652	Right-handed alpha
Helix 86	AJ5	D	652	663	Right-handed alpha
Helix 87	AJ6	D	668	685	Right-handed alpha
Helix 88	AJ7	D	686	691	Right-handed alpha
Helix 89	AJ8	D	692	717	Right-handed alpha
Helix 90	AJ9	D	718	720	Right-handed 310
Helix 91	AK1	D	757	789	Right-handed alpha
Helix 92	AK2	D	807	811	Right-handed 310

There are 13 sheets in PDB entry 7M2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	133	136	parallel
Strand 3	B	166	173	parallel
Strand 4	B	139	141	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	133	136	parallel
Strand 3	B	166	173	parallel
Strand 4	B	200	205	parallel
Strand 5	B	267	271	parallel
Strand 6	B	373	380	anti-parallel
Strand 7	B	315	323	anti-parallel
Strand 8	B	353	356	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	67	69	parallel
Strand 3	B	92	93	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	62	63	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	4	10	parallel
Strand 3	A	133	139	parallel
Strand 4	A	166	173	parallel
Strand 5	A	200	205	parallel
Strand 6	A	267	272	parallel
Strand 7	A	372	380	anti-parallel
Strand 8	A	315	324	anti-parallel
Strand 9	A	352	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	D	8	10	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	383	385	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	544	first strand
Strand 2	C	559	562	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	683	first strand
Strand 2	C	689	691	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	92	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	234	first strand
Strand 2	D	324	326	parallel
Strand 3	D	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	486	first strand
Strand 2	D	560	563	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M2Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M2Z