Analysis of interatomic Contacts of Structural Units in PDB entry:
7M30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M30 entry

There are 10 chains in PDB entry 7M30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 86	TYR 169
C	GLU 29	ARG 163
D	THR 45	VAL 214
E	GLN 19	ASN 129
F	VAL 2	SER 113
G	SER 1	GLN 108
H	VAL 2	SER 113
L	ASP 1	LYS 106
M	LEU 2	SER 113
N	ASP 1	ARG 108

There are 30 helices in PDB entry 7M30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	102	113	Right-handed alpha
Helix 2	AA2	B	117	126	Right-handed alpha
Helix 3	AA3	B	132	142	Right-handed alpha
Helix 4	AA4	C	71	78	Right-handed alpha
Helix 5	AA5	C	79	84	Right-handed 310
Helix 6	AA6	C	85	91	Right-handed alpha
Helix 7	AA7	C	92	97	Right-handed 310
Helix 8	AA8	C	117	119	Right-handed 310
Helix 9	AA9	C	145	156	Right-handed alpha
Helix 10	AB1	D	48	57	Right-handed alpha
Helix 11	AB2	D	67	69	Right-handed 310
Helix 12	AB3	D	80	84	Right-handed 310
Helix 13	AB4	D	104	118	Right-handed alpha
Helix 14	AB5	D	120	131	Right-handed alpha
Helix 15	AB6	D	140	151	Right-handed alpha
Helix 16	AB7	E	21	27	Right-handed alpha
Helix 17	AB8	E	35	41	Right-handed alpha
Helix 18	AB9	E	45	69	Right-handed alpha
Helix 19	AC1	E	73	79	Right-handed alpha
Helix 20	AC2	E	81	95	Right-handed alpha
Helix 21	AC3	F	28	31	Right-handed 310
Helix 22	AC4	F	61	64	Right-handed 310
Helix 23	AC5	F	83	87	Right-handed 310
Helix 24	AC6	G	27	31	Right-handed 310
Helix 25	AC7	G	79	83	Right-handed 310
Helix 26	AC8	H	28	32	Right-handed 310
Helix 27	AC9	H	83	87	Right-handed 310
Helix 28	AD1	L	79	83	Right-handed 310
Helix 29	AD2	M	83	87	Right-handed 310
Helix 30	AD3	N	79	83	Right-handed 310

There are 22 sheets in PDB entry 7M30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	159	162	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	61	65	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	121	122	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	D	155	165	anti-parallel
Strand 3	D	168	182	anti-parallel
Strand 4	D	188	198	anti-parallel
Strand 5	E	117	126	anti-parallel
Strand 6	E	107	114	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	78	first strand
Strand 2	D	87	93	anti-parallel
Strand 3	D	98	102	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	100	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	44	48	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	95	98	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	70	75	anti-parallel
Strand 3	G	62	67	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	101	104	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	101	104	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	96	anti-parallel
Strand 5	M	101	103	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	96	anti-parallel
Strand 5	M	107	109	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	34	38	anti-parallel
Strand 5	N	45	49	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M30

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M30