Analysis of interatomic Contacts of Structural Units in PDB entry:
7M33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M33 entry

There are 2 chains in PDB entry 7M33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PHE 2	GLN 574
D	LYS 2	GLN 665

There are 53 helices in PDB entry 7M33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	8	Right-handed alpha
Helix 2	AA2	C	8	15	Right-handed alpha
Helix 3	AA3	C	15	33	Right-handed alpha
Helix 4	AA4	C	34	49	Right-handed alpha
Helix 5	AA5	C	53	103	Right-handed alpha
Helix 6	AA6	C	105	112	Right-handed alpha
Helix 7	AA7	C	113	121	Right-handed alpha
Helix 8	AA8	C	122	133	Right-handed alpha
Helix 9	AA9	C	133	156	Right-handed alpha
Helix 10	AB1	C	158	166	Right-handed alpha
Helix 11	AB2	C	167	207	Right-handed alpha
Helix 12	AB3	C	207	214	Right-handed alpha
Helix 13	AB4	C	220	233	Right-handed alpha
Helix 14	AB5	C	235	243	Right-handed alpha
Helix 15	AB6	C	244	268	Right-handed alpha
Helix 16	AB7	C	274	288	Right-handed alpha
Helix 17	AB8	C	288	317	Right-handed alpha
Helix 18	AB9	C	376	385	Right-handed alpha
Helix 19	AC1	C	406	413	Right-handed alpha
Helix 20	AC2	C	428	434	Right-handed alpha
Helix 21	AC3	C	442	451	Right-handed alpha
Helix 22	AC4	C	453	458	Right-handed alpha
Helix 23	AC5	C	476	492	Right-handed alpha
Helix 24	AC6	C	501	505	Right-handed 310
Helix 25	AC7	C	506	522	Right-handed alpha
Helix 26	AC8	C	533	538	Right-handed alpha
Helix 27	AC9	C	555	562	Right-handed alpha
Helix 28	AD1	C	563	574	Right-handed alpha
Helix 29	AD2	D	3	13	Right-handed alpha
Helix 30	AD3	D	14	45	Right-handed alpha
Helix 31	AD4	D	48	52	Right-handed 310
Helix 32	AD5	D	134	143	Right-handed alpha
Helix 33	AD6	D	145	196	Right-handed alpha
Helix 34	AD7	D	197	204	Right-handed alpha
Helix 35	AD8	D	205	214	Right-handed alpha
Helix 36	AD9	D	214	230	Right-handed alpha
Helix 37	AE1	D	230	249	Right-handed alpha
Helix 38	AE2	D	249	257	Right-handed alpha
Helix 39	AE3	D	258	298	Right-handed alpha
Helix 40	AE4	D	298	306	Right-handed alpha
Helix 41	AE5	D	307	337	Right-handed alpha
Helix 42	AE6	D	338	361	Right-handed alpha
Helix 43	AE7	D	368	384	Right-handed alpha
Helix 44	AE8	D	385	411	Right-handed alpha
Helix 45	AE9	D	471	477	Right-handed alpha
Helix 46	AF1	D	498	504	Right-handed alpha
Helix 47	AF2	D	520	526	Right-handed alpha
Helix 48	AF3	D	531	546	Right-handed alpha
Helix 49	AF4	D	568	584	Right-handed alpha
Helix 50	AF5	D	600	613	Right-handed alpha
Helix 51	AF6	D	624	630	Right-handed alpha
Helix 52	AF7	D	648	654	Right-handed alpha
Helix 53	AF8	D	654	665	Right-handed alpha

There are 10 sheets in PDB entry 7M33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	361	first strand
Strand 2	C	337	344	anti-parallel
Strand 3	C	392	397	anti-parallel
Strand 4	C	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	417	first strand
Strand 2	C	495	499	parallel
Strand 3	C	525	529	parallel
Strand 4	C	367	371	parallel
Strand 5	C	541	545	parallel
Strand 6	C	550	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	70	74	anti-parallel
Strand 3	D	65	67	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	131	132	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	113	first strand
Strand 2	D	116	121	anti-parallel
Strand 3	D	124	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	486	489	anti-parallel
Strand 3	D	492	493	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	508	first strand
Strand 2	D	587	590	parallel
Strand 3	D	618	620	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	519	first strand
Strand 2	D	559	560	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	637	638	first strand
Strand 2	D	641	642	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M33

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M33