Analysis of interatomic Contacts of Structural Units in PDB entry:
7M3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7M3J entry

There are 2 chains in PDB entry 7M3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	CYS 874
B	ALA 26	SER 875

There are 48 helices in PDB entry 7M3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	83	Right-handed alpha
Helix 2	AA2	A	103	120	Right-handed alpha
Helix 3	AA3	A	149	158	Right-handed alpha
Helix 4	AA4	A	190	205	Right-handed alpha
Helix 5	AA5	A	219	234	Right-handed alpha
Helix 6	AA6	A	248	262	Right-handed alpha
Helix 7	AA7	A	276	286	Right-handed alpha
Helix 8	AA8	A	307	309	Right-handed 310
Helix 9	AA9	A	310	315	Right-handed alpha
Helix 10	AB1	A	329	335	Right-handed alpha
Helix 11	AB2	A	347	356	Right-handed alpha
Helix 12	AB3	A	416	436	Right-handed alpha
Helix 13	AB4	A	456	466	Right-handed alpha
Helix 14	AB5	A	610	637	Right-handed alpha
Helix 15	AB6	A	640	645	Right-handed alpha
Helix 16	AB7	A	649	665	Right-handed alpha
Helix 17	AB8	A	666	669	Right-handed 310
Helix 18	AB9	A	673	697	Right-handed alpha
Helix 19	AC1	A	722	746	Right-handed alpha
Helix 20	AC2	A	770	794	Right-handed alpha
Helix 21	AC3	A	802	828	Right-handed alpha
Helix 22	AC4	A	832	852	Right-handed alpha
Helix 23	AC5	A	854	862	Right-handed alpha
Helix 24	AC6	A	864	869	Right-handed alpha
Helix 25	AC7	B	64	84	Right-handed alpha
Helix 26	AC8	B	103	124	Right-handed alpha
Helix 27	AC9	B	146	158	Right-handed alpha
Helix 28	AD1	B	171	176	Right-handed 310
Helix 29	AD2	B	189	205	Right-handed alpha
Helix 30	AD3	B	218	233	Right-handed alpha
Helix 31	AD4	B	248	262	Right-handed alpha
Helix 32	AD5	B	273	275	Right-handed 310
Helix 33	AD6	B	276	287	Right-handed alpha
Helix 34	AD7	B	296	301	Right-handed alpha
Helix 35	AD8	B	329	334	Right-handed alpha
Helix 36	AD9	B	347	356	Right-handed alpha
Helix 37	AE1	B	416	436	Right-handed alpha
Helix 38	AE2	B	456	466	Right-handed alpha
Helix 39	AE3	B	593	596	Right-handed 310
Helix 40	AE4	B	610	637	Right-handed alpha
Helix 41	AE5	B	647	664	Right-handed alpha
Helix 42	AE6	B	665	669	Right-handed 310
Helix 43	AE7	B	673	679	Right-handed alpha
Helix 44	AE8	B	679	697	Right-handed alpha
Helix 45	AE9	B	722	746	Right-handed alpha
Helix 46	AF1	B	769	793	Right-handed alpha
Helix 47	AF2	B	802	828	Right-handed alpha
Helix 48	AF3	B	832	862	Right-handed alpha

There are 16 sheets in PDB entry 7M3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	138	143	parallel
Strand 5	A	164	166	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	294	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	489	493	anti-parallel
Strand 3	A	507	511	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	476	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	503	504	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	554	first strand
Strand 2	A	564	566	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	583	584	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	760	765	parallel
Strand 3	A	750	753	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	32	39	parallel
Strand 3	B	138	141	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	184	185	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	209	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	490	494	anti-parallel
Strand 3	B	505	511	anti-parallel
Strand 4	B	521	523	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	476	477	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	566	567	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	766	parallel
Strand 3	B	749	753	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7M3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7M3J