Analysis of interatomic Contacts of Structural Units in PDB entry:
7M5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M5O entry

There are 2 chains in PDB entry 7M5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 53ARG 716
B
 A -23 G -16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7M5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 75Right-handed 310
Helix 2
AA2
A
76 91Right-handed alpha
Helix 3
AA3
A
93 100Right-handed alpha
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
129 169Right-handed alpha
Helix 6
AA6
A
201 205Right-handed 310
Helix 7
AA7
A
252 256Right-handed 310
Helix 8
AA8
A
289 296Right-handed alpha
Helix 9
AA9
A
313 323Right-handed alpha
Helix 10
AB1
A
331 338Right-handed alpha
Helix 11
AB2
A
373 383Right-handed alpha
Helix 12
AB3
A
426 454Right-handed alpha
Helix 13
AB4
A
456 466Right-handed alpha
Helix 14
AB5
A
469 483Right-handed alpha
Helix 15
AB6
A
499 509Right-handed alpha
Helix 16
AB7
A
537 544Right-handed alpha
Helix 17
AB8
A
549 567Right-handed alpha
Helix 18
AB9
A
567 597Right-handed alpha
Helix 19
AC1
A
623 627Right-handed 310
Helix 20
AC2
A
635 651Right-handed alpha
Helix 21
AC3
A
659 664Right-handed alpha
Helix 22
AC4
A
674 678Right-handed 310
Helix 23
AC5
A
697 709Right-handed alpha
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There are 3 sheets in PDB entry 7M5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
351 355anti-parallel
Strand 4
A
61 69anti-parallel
Strand 5
A
307 312anti-parallel
Strand 6
A
299 304anti-parallel
Strand 7
A
207 208anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
269 271anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
656 658parallel
Strand 3
A
604 606parallel
Strand 4
A
388 395parallel
Strand 5
A
401 408anti-parallel
Strand 6
A
417 424anti-parallel
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