Analysis of interatomic Contacts of Structural Units in PDB entry:
7M5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M5Y entry

There is 1 chain in PDB entry 7M5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 35PRO 1173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7M5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 58Right-handed alpha
Helix 2
AA2
A
59 66Right-handed alpha
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
186 188Right-handed 310
Helix 5
AA5
A
193 200Right-handed alpha
Helix 6
AA6
A
205 217Right-handed alpha
Helix 7
AA7
A
227 236Right-handed alpha
Helix 8
AA8
A
238 253Right-handed alpha
Helix 9
AA9
A
256 290Right-handed alpha
Helix 10
AB1
A
310 312Right-handed 310
Helix 11
AB2
A
369 371Right-handed 310
Helix 12
AB3
A
398 401Right-handed 310
Helix 13
AB4
A
402 413Right-handed alpha
Helix 14
AB5
A
423 428Right-handed 310
Helix 15
AB6
A
429 450Right-handed alpha
Helix 16
AB7
A
453 469Right-handed alpha
Helix 17
AB8
A
472 490Right-handed alpha
Helix 18
AB9
A
497 499Right-handed 310
Helix 19
AC1
A
500 506Right-handed alpha
Helix 20
AC2
A
549 558Right-handed alpha
Helix 21
AC3
A
572 582Right-handed alpha
Helix 22
AC4
A
656 664Right-handed alpha
Helix 23
AC5
A
672 682Right-handed alpha
Helix 24
AC6
A
732 741Right-handed alpha
Helix 25
AC7
A
753 764Right-handed alpha
Helix 26
AC8
A
826 837Right-handed alpha
Helix 27
AC9
A
840 847Right-handed alpha
Helix 28
AD1
A
855 869Right-handed alpha
Helix 29
AD2
A
883 889Right-handed alpha
Helix 30
AD3
A
914 953Right-handed alpha
Helix 31
AD4
A
959 968Right-handed alpha
Helix 32
AD5
A
968 978Right-handed alpha
Helix 33
AD6
A
998 1024Right-handed alpha
Helix 34
AD7
A
1038 1042Right-handed 310
Helix 35
AD8
A
1044 1066Right-handed alpha
Helix 36
AD9
A
1078 1098Right-handed alpha
Helix 37
AE1
A
1113 1149Right-handed alpha
Helix 38
AE2
A
1157 1169Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7M5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
181 184anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
305 308anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
391 397anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
906 907anti-parallel
Strand 3
A
891 894parallel
Strand 4
A
873 875parallel
Strand 5
A
509 512parallel
Strand 6
A
745 749parallel
Strand 7
A
848 851parallel
Strand 8
A
821 825parallel
Strand 9
A
772 778parallel
Strand 10
A
789 793anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 530first strand
Strand 2
A
717 725anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
650 655anti-parallel
Strand 5
A
636 642anti-parallel
Strand 6
A
622 627anti-parallel
Strand 7
A
601 604anti-parallel
Strand 8
A
584 586anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il