Analysis of interatomic Contacts of Structural Units in PDB entry:
7M69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7M69 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 7M69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 17ALA 907
A
 ASP 909ALA 910
A
 LEU 912GLY 913
A
 ILE 915LYS 1484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7M69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 60Right-handed alpha
Helix 2
AA2
A
71 95Right-handed alpha
Helix 3
AA3
A
96 98Right-handed 310
Helix 4
AA4
A
101 124Right-handed alpha
Helix 5
AA5
A
134 160Right-handed alpha
Helix 6
AA6
A
169 189Right-handed alpha
Helix 7
AA7
A
197 201Right-handed 310
Helix 8
AA8
A
216 223Right-handed alpha
Helix 9
AA9
A
226 236Right-handed alpha
Helix 10
AB1
A
251 269Right-handed alpha
Helix 11
AB2
A
273 284Right-handed alpha
Helix 12
AB3
A
284 328Right-handed alpha
Helix 13
AB4
A
342 392Right-handed alpha
Helix 14
AB5
A
393 400Right-handed alpha
Helix 15
AB6
A
401 411Right-handed alpha
Helix 16
AB7
A
411 445Right-handed alpha
Helix 17
AB8
A
449 493Right-handed alpha
Helix 18
AB9
A
493 501Right-handed alpha
Helix 19
AC1
A
503 555Right-handed alpha
Helix 20
AC2
A
563 603Right-handed alpha
Helix 21
AC3
A
668 678Right-handed alpha
Helix 22
AC4
A
706 713Right-handed alpha
Helix 23
AC5
A
718 729Right-handed alpha
Helix 24
AC6
A
731 737Right-handed alpha
Helix 25
AC7
A
754 769Right-handed alpha
Helix 26
AC8
A
784 797Right-handed alpha
Helix 27
AC9
A
813 820Right-handed alpha
Helix 28
AD1
A
836 843Right-handed alpha
Helix 29
AD2
A
920 929Right-handed alpha
Helix 30
AD3
A
936 946Right-handed alpha
Helix 31
AD4
A
947 982Right-handed alpha
Helix 32
AD5
A
987 1016Right-handed alpha
Helix 33
AD6
A
1016 1035Right-handed alpha
Helix 34
AD7
A
1037 1044Right-handed alpha
Helix 35
AD8
A
1045 1088Right-handed alpha
Helix 36
AD9
A
1089 1091Right-handed 310
Helix 37
AE1
A
1092 1124Right-handed alpha
Helix 38
AE2
A
1125 1138Right-handed alpha
Helix 39
AE3
A
1138 1146Right-handed alpha
Helix 40
AE4
A
1147 1202Right-handed alpha
Helix 41
AE5
A
1205 1217Right-handed alpha
Helix 42
AE6
A
1218 1247Right-handed alpha
Helix 43
AE7
A
1311 1321Right-handed alpha
Helix 44
AE8
A
1337 1341Right-handed alpha
Helix 45
AE9
A
1342 1348Right-handed alpha
Helix 46
AF1
A
1363 1368Right-handed alpha
Helix 47
AF2
A
1375 1386Right-handed alpha
Helix 48
AF3
A
1387 1394Right-handed alpha
Helix 49
AF4
A
1404 1408Right-handed 310
Helix 50
AF5
A
1411 1426Right-handed alpha
Helix 51
AF6
A
1442 1455Right-handed alpha
Helix 52
AF7
A
1467 1474Right-handed alpha
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There are 6 sheets in PDB entry 7M69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 615first strand
Strand 2
A
687 690parallel
Strand 3
A
624 628anti-parallel
Strand 4
A
652 654anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 649first strand
Strand 2
A
632 635anti-parallel
Strand 3
A
681 684anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 696first strand
Strand 2
A
773 777parallel
Strand 3
A
806 810parallel
Strand 4
A
658 662parallel
Strand 5
A
822 826parallel
Strand 6
A
831 835anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1294 1296first strand
Strand 2
A
1274 1277anti-parallel
Strand 3
A
1329 1332anti-parallel
Strand 4
A
1335 1336anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1349 1353first strand
Strand 2
A
1430 1434parallel
Strand 3
A
1461 1464parallel
Strand 4
A
1301 1305parallel
Strand 5
A
1476 1479parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1361 1362first strand
Strand 2
A
1402 1403anti-parallel
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